Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq3650 280 1e-70 seq593 95.1 1e-14 >seq3650 Length=1334389 Score = 280 bits (310), Expect = 1e-70 Identities = 651/968 (67%), Gaps = 25/968 (3%) Strand=Plus/Minus Query 29073 GCGTATTTTGTAGAATGGGGCGTATATGGCCGCAACTTTCCGGTAGACAAAGTGCCGCTG 29132 || || || ||||||||||| || || | || || || || || || || | Sbjct 961510 GCATACTTCGTAGAATGGGGTGTGTACCCGAGAAAATTCCCAGTCGATCGTGTTCCAATT 961451 Query 29133 CCCAACCTCTCGCATCTGTTGTACGGTTTCATACCTATTTGCGGCGGCGACGGGCTCAAC 29192 || ||||| | ||| | | ||||| ||||| || |||||||| || || || ||||| Sbjct 961450 CCTAACCTGACTCATTTACTATACGGCTTCATTCCAATTTGCGGTGGAGATGGCATCAAC 961391 Query 29193 GACGCCCTCAAAACCATTCCCGGCAGTTTTGAGGCGCTGCAACGCTCTTGCAAGGGCCGT 29252 ||| | | ||| || |||||||| | || || || | || |||| ||||| Sbjct 961390 GACAGCTTAAAAGAGATCGAAGGCAGTTTCCAAGCTCTTCAGAGATCGTGCAGCGGCCGA 961331 Query 29253 TCAGATTTCAAAGTCGCTATTCACGATCCGTGGGCCGCGATACAAAAACCGCAAAAGGGC 29312 |||||||||||| ||||||||||||| |||||||| | || ||||| || ||||| Sbjct 961330 GAAGATTTCAAAGTATCTATTCACGATCCTTGGGCCGCTCTTCAGAAACCACAGAAGGGA 961271 Query 29313 GTGTCTGCGTGGAACGAGCCCTACAAAGGAAACTTCGGTCAGCTAATGGCGGCCAAGCTG 29372 ||||| | |||||||| || |||||||| ||||| || ||||| ||| | ||| | Sbjct 961270 TTGTCTTCCTGGAACGAACCTTACAAAGGCAACTTTGGCCAGCTGATGTCTCTCAAACAA 961211 Query 29373 GCCAATCCGCACCTCAAAATTCTGCCGTCCATCGGCGGCTGGACATTGTCCGACCCGTTC 29432 |||| || | || || || || || |||||||| || |||||| | |||| || ||| Sbjct 961210 GCCAGGCCTGAACTTAAGATCCTACCTTCCATCGGTGGTTGGACACTAGCCGATCCCTTC 961151 Query 29433 TATTTCATGCACGACGCGGAAAAACGGCGTGTGTTTGTGGACTCGGTCAGAGAATTTCTG 29492 | ||| | |||| ||| || | | || || || || || | ||| || || Sbjct 961150 TTCTTCTTCACCGACAAGGAGAAGAGAGATCGCTTCGTTGATTCTGTAAAAGATTTCCTC 961091 Query 29493 CAGGTGTGGAAGTTTTTTGACGGCGTGGACATAGACTGGGAGTTTCCGGGTGGCAAAGGC 29552 | |||||||| || || || || ||||| || ||||| || || || || || || Sbjct 961090 TTGACCTGGAAGTTCTTCGATGGTGTTGACATCGATTGGGAATTCCCTGGAGGTAAGGGA 961031 Query 29553 GCCAA-CCCGACACTTGGCAACGGGGAGCGCGACGCCGACACGTATAACATT---TTACT 29608 || || |||||| || || | | | | |||| || | || | || || ||| | Sbjct 961030 GCTAACCCCGAC-CTCGGTAGCCCGAA---AGACG--GAGATGT-TTACGTTGAATTAAT 960978 Query 29609 AAAGGAATTGCGCGCAATGATGGACGA-GTTACAATTGCAAACGGGCAAAACGTACGAGT 29667 ||||||||||| | |||| || |||| || | | | || || || | |||||| Sbjct 960977 GAAGGAATTGCGTGAAATGTTGAACGACCTTTCTGAAG-AGACCGGTAAGAAATACGAGC 960919 Query 29668 TGACAAGCGCAATCAGTTCCGGACATGACAAGATTGCTGTAGTTAAATACGACGCTGCGC 29727 |||| ||| |||||| | ||| || ||||| || || | ||| | || | Sbjct 960918 TGACCTCCGCTATCAGTGCTGGATGGGATAAGATCCAAGTTGTCGATTACAGTGAAGCTC 960859 Query 29728 AAAAGTTTCTCGATAAAATATTCCTCATGAGCTACGATTTTAAAGGCGCGTGGTCAAACA 29787 |||||| | | || | || ||||| ||||| || |||||||||||||| ||||| ||| Sbjct 960858 AAAAGTATATGGACCATATCTTCCTTATGAGTTATGATTTTAAAGGCGCCTGGTCTAACG 960799 Query 29788 CCGATTTGGGCTACCAAACTACTCTCTACGCGCCGAGTTGGAACCCAAACGAACTGTACA 29847 | | || | || ||| | || ||||| || ||||||||| || ||| || | Sbjct 960798 ACACCCTCGGTCATCAGACTCCACTTTACGCACCCGCTTGGAACCCTAAGGAAACTTATA 960739 Query 29848 ACACGGACCACGCCGTTA---AGTTGCTCACGAACCAGGGCGTGGACCCGCGCAAAATTA 29904 ||| ||| | || | | ||||| | || |||||| |||| || ||| Sbjct 960738 CCACTGACTTTGGTGTGAAATATTTGCTTGC---TCAAGGCGTGAACCCTAAGAAGATTG 960682 Query 29905 TTGTGGGCGTCGCCATGTACGGCCGCGGTTGGACAGGCGTGTCGGGTTATGACGGTGACA 29964 | |||||||| || |||||||| ||||| ||||| || || || | || ||| |||| Sbjct 960681 TGGTGGGCGTAGCTATGTACGGACGCGGCTGGACTGGTGT-TC--ATAATTACGAAGACA 960625 Query 29965 ACTAT---TTTACGGGCACAGCTGCTGGGCCCGTGACCGGCACTTGGGAAGACGGCGTTG 30021 || || || || |||| || |||| || || | || |||||| ||||||| || | Sbjct 960624 ACAATCCATTCACTGGCAACGCGACTGGACCAGTCAAAGGTACTTGGCAAGACGGTGTAG 960565 Query 30022 TCGACTAT 30029 | |||||| Sbjct 960564 TTGACTAT 960557 >seq593 Length=2014934 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| || || ||||| |||||||| ||||| ||| | || || || Sbjct 755143 ATGCAAATTTTCGTGAAGACTTTGACAGGCAAGACCATCACCTTGGAGGTTGAACCTTCT 755084 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | || ||| ||||| ||||||||||| | ||| || ||| Sbjct 755083 GATACCATTGAGAATGTCAAAGCCAAGATCCAGGATAAAGAAGGTATCCCCCCAGACCAG 755024 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 |||||| | || | ||| || |||||||| ||||| | | || | | ||||||||| Sbjct 755023 CAGAGATTGATCTTTGCTGGCAAACAGCTAGAGGATGGCCGTACCCTTTCTGACTACAAC 754964 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAggggg 107782 || |||||||| || || | ||| |||| | | ||||||| || Sbjct 754963 ATCCAAAAGGAATCAACACTTCACTTGGTACTCCGTCTGCGAGGTGG 754917 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| |||||||| ||||| ||||||| || || || || | || |||| | Sbjct 755372 AATGCAGATTTTTGTTAAAACGCTAACAGGAAAGACTATCACACTGGAGGTGGAGCCATC 755313 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | |||||| || ||| || || || ||| | ||| ||||| Sbjct 755312 AGACACAATTGAGAATGTAAAAGCGAAAATTCAAGACAAGGAGGGCATTCCCCCAGATCA 755253 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| | ||||| | ||||||||| ||||| || || | ||| | | |||||||| Sbjct 755252 GCAACGTCTTATCTTTGCGGGTAAGCAGCTCGAAGATGGTCGCACACTTTCAGACTACAA 755193 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||||| || ||| | ||| |||| Sbjct 755192 TATTCAAAAGGAATCGACGCTTCACTTGGT 755163 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398857967281186