Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq3650 260 1e-64 seq593 163 2e-35 seq2316 149 5e-31 seq1964 105 5e-18 seq802 91.5 1e-13 >seq3650 Length=1334389 Score = 260 bits (288), Expect = 1e-64 Identities = 670/1014 (66%), Gaps = 16/1014 (2%) Strand=Plus/Minus Query 45063 AGAAAACAACAAGCCCTATGAAATAGGTACCACTGACAAAACTGTCGCCGCTTATTTCGT 45122 |||||| ||||| | | | ||| || || ||| ||| ||| | || || ||||| Sbjct 961556 AGAAAAGAACAAACTAT-TCAAACAG--ACTTCTGGAAAAGTTGTTGGAGCATACTTCGT 961500 Query 45123 TGAATGGGGAGTGTATGGGCGCAATTTTCCTATGAACCGCGTGCCAGTGCCGAACCTTAC 45182 |||||||| ||||| | | || || || | | || || ||| | || ||||| || Sbjct 961499 AGAATGGGGTGTGTACCCGAGAAAATTCCCAGTCGATCGTGTTCCAATTCCTAACCTGAC 961440 Query 45183 GCATTTGTTATACGGTTTTATTCCTATATGCGGTGGCGATGGCATTAATGACAGTCTTAA 45242 ||||| ||||||| || ||||| || |||||||| |||||||| || ||||| ||||| Sbjct 961439 TCATTTACTATACGGCTTCATTCCAATTTGCGGTGGAGATGGCATCAACGACAG-CTTAA 961381 Query 45243 AAC-GATTACAGGCAGTTTTGAAGCGTTGCAAAAATCGTGCGCCGGCCGCTCAGATTTCA 45301 || ||| ||||||||| |||| | || | ||||||| |||||| |||||||| Sbjct 961380 AAGAGATCGAAGGCAGTTTCCAAGCTCTTCAGAGATCGTGCAGCGGCCGAGAAGATTTCA 961321 Query 45302 AAGTGAGCATTCACGACCCATGGGCCGCTGTGCAAAAACCACAAAAAGGCGTTTCTGCTT 45361 |||| |||||||| || ||||||||| | || |||||||| || || | ||| | | Sbjct 961320 AAGTATCTATTCACGATCCTTGGGCCGCTCTTCAGAAACCACAGAAGGGATTGTCTTCCT 961261 Query 45362 GGAACGAACCGTATAAAGGCAATTTTGGACAAATCATGGCTGTAAAACGGGCAAATCCTC 45421 |||||||||| || |||||||| ||||| || | ||| || | |||| || | ||| Sbjct 961260 GGAACGAACCTTACAAAGGCAACTTTGGCCAGCTGATGTCTCTCAAACAAGCCAGGCCTG 961201 Query 45422 ATTTAAAAGTGTTGCCATCGATTGGCGGCTGGACGCTGTCCGATCCGTTTTACCATTTGC 45481 | | || | | || || || || || ||||| || ||||||| || | | || Sbjct 961200 AACTTAAGATCCTACCTTCCATCGGTGGTTGGACACTAGCCGATCCCTTCTTCTTCTTCA 961141 Query 45482 ACGATGCGGAGAAACGCGCTTTGTTTGTGGAATCCGTGCGCGAATTTTTAACTACGTGGA 45541 ||| |||||| | | | || || || || || || || | || |||| Sbjct 961140 CCGACAAGGAGAAGAGAGATCGCTTCGTTGATTCTGTAAAAGATTTCCTCTTGACCTGGA 961081 Query 45542 AATTTTTTGACGGAGTCGATATAGATTGGGAGTTTCCCGGCGGCAATGGCGCCAATC--- 45598 | || || || || || || || |||||||| || || || || || || || || | Sbjct 961080 AGTTCTTCGATGGTGTTGACATCGATTGGGAATTCCCTGGAGGTAAGGGAGCTAACCCCG 961021 Query 45599 -CATCGGTGGGCGATCCAGAACGCGACGGTCTCACTTATGTAGCACTGCTGCGCGATTTG 45657 | ||||| | || ||| ||||| ||| || | | | || || ||| Sbjct 961020 ACCTCGGT-----AGCCCGAA--AGACGGAGATGTTTACGTTGAATTAATGAAGGAATTG 960968 Query 45658 CGCGACATGCTCGATCAATTGGCGCACGAAACCGGTCGGCGCTACGAACTGACTACGGCT 45717 || || ||| | | | | | | || |||||| | ||||| ||||| | ||| Sbjct 960967 CGTGAAATGTTGAACGACCTTTCTGAAGAGACCGGTAAGAAATACGAGCTGACCTCCGCT 960908 Query 45718 ATAAGCGCCGGTGACGACAAAATCGCTTTGGTAGATTATCAAGACGCGCAAACTTATCTC 45777 || || || || || || ||| | || ||||| || || |||| ||| | Sbjct 960907 ATCAGTGCTGGATGGGATAAGATCCAAGTTGTCGATTACAGTGAAGCTCAAAAGTATATG 960848 Query 45778 GATCGAATCTTTTTAATGACGTATGATTTTAAAGGCGCTTGGTCGAACTCGGATTTGGGC 45837 || | ||||| | |||| ||||||||||||||||| ||||| ||| | || Sbjct 960847 GACCATATCTTCCTTATGAGTTATGATTTTAAAGGCGCCTGGTCTAACGACACCCTCGGT 960788 Query 45838 CATCAAACGGCCGTGTACGCGCCAGAATGGAATCGCGACGAGCGTTACACAGTCGACTAC 45897 ||||| || | | ||||| || | ||||| | | || ||| || |||| Sbjct 960787 CATCAGACTCCACTTTACGCACCCGCTTGGAACCCTAAGGAAACTTATACCACTGACTTT 960728 Query 45898 GCGGTGCACGTTTTGCTCGAAAAACGGGTAAAGCCTCAAAAAATCGTGCTCGGCGTGGCA 45957 | ||| | |||||| | || | || || ||| | || || ||| | ||||| || Sbjct 960727 GGTGTGAAATATTTGCTTGCTCAAGGCGTGAACCCTAAGAAGATTGTGGTGGGCGTAGCT 960668 Query 45958 ATGTACGGTCGCGGCTGGACCGGAGTAATTAACTATCAAGACGACAACCCGTTTACCGGC 46017 |||||||| ||||||||||| || || ||| || ||||| |||| || || || ||| Sbjct 960667 ATGTACGGACGCGGCTGGACTGGTGTTCATAATTACGAAGACAACAATCCATTCACTGGC 960608 Query 46018 ATCGCAACCGGGCCCGTGTCCGGCACTTGGGAAGACGGTGTGATCGATTATCGA 46071 | ||| || || || || || |||||| |||||||||| | || ||| || Sbjct 960607 AACGCGACTGGACCAGTCAAAGGTACTTGGCAAGACGGTGTAGTTGACTATAGA 960554 >seq593 Length=2014934 Score = 163 bits (180), Expect = 2e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG- 29617 |||||| || | ||| ||||| || ||||| || |||||||| || ||||| ||||| | Sbjct 755372 TCCTCCTCTAAGACGGAGCACTAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAATCTGA 755431 Query 29618 CAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCG 29677 ||||| |||| ||| || || |||||||||||| | |||||||| ||||| || || | Sbjct 755432 CAATG-TGCGTCCATCTTCAAGCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGGG 755490 Query 29678 GAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 |||| || ||||||||||| | ||| || ||| |||| | |||||||| | || | Sbjct 755491 GAATGCCTTCTTTGTCTTGGATTTTAGCCTTAACATTTTCAATTGTGTCAGATGGCTCAA 755550 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || | || ||||| ||||| || ||||| ||||| || |||||||| Sbjct 755551 CCTCTAATGTGATAGTCTTGCCTGTCAAGGTCTTAACGAAGATCTGCAT 755599 Score = 158 bits (174), Expect = 9e-34 Identities = 174/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||| || ||||| || ||||| |||||||| ||||| |||||||| || || || | | Sbjct 755145 CCTCCTCTTAAACGAAGAACCAAGTGAAGCGTCGATTCCTTTTGAATATTGTAGTCTGAA 755204 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| ||||| || || || ||| | || | | ||||||||| || ||| Sbjct 755205 AGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGA 755264 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTAC 29738 || ||||| |||||||| |||||| | ||| ||| | || | ||||| || | || || Sbjct 755265 ATGCCCTCCTTGTCTTG-AATTTTCGCTTTTACATTCTCAATTGTGTCTGATGGCTCCAC 755323 Query 29739 TTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || || ||||| || || |||| ||||||||||| ||||||||| Sbjct 755324 CTCCAGTGTGATAGTCTTTCCTGTTAGCGTTTTAACAAAAATCTGCATT 755372 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| || ||||| ||||| || ||||| ||||| ||||| || || | | Sbjct 754917 CCACCTCGCAGACGGAGTACCAAGTGAAGTGTTGATTCCTTTTGGATGTTGTAGTCAGAA 754976 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| || ||| || || |||||||||||| | |||||||| ||||| || || || Sbjct 754977 AGGGTACGGCCATCCTCTAGCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGG 755036 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 ||||| ||||| || || | || ||||||| | || | || |||||| |||| || Sbjct 755037 ATACCTTCTTTATCCTGGATCTTGGCTTTGACATTCTCAATGGTATCAGAAGGTTCAACC 755096 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || | || || || ||||| || || || || || || || ||||| Sbjct 755097 TCCAAGGTGATGGTCTTGCCTGTCAAAGTCTTCACGAAAATTTGCAT 755143 Score = 127 bits (140), Expect = 2e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 29599 TTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATC 29658 ||||| ||||| || || | || ||| || ||| || || |||||||||||| | ||| Sbjct 754728 TTTTGGATGTTGTAGTCAGAAAGGGTACGGCCATCCTCTAGCTGTTTGCCAGCAAAGATC 754787 Query 29659 AATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCT 29718 ||||| ||||| || || || ||||| || |||||||| | || || ||| | || Sbjct 754788 AATCTCTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCG 754847 Query 29719 ACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAAT 29778 | ||||| || |||||||||| | || ||||| ||||| || | |||||||||||| Sbjct 754848 ATGGTGTCCGAGGGTTCTACTTCTAATGTGATAGTCTTGCCTGTCAGGGTTTTAACAAAG 754907 Query 29779 ATCTGCAT 29786 |||||||| Sbjct 754908 ATCTGCAT 754915 >seq2316 Length=6356476 Score = 149 bits (164), Expect = 5e-31 Identities = 174/230 (76%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCG-C 29618 ||||| | || | || |||||| ||||| || ||||| || || ||||| || || | | Sbjct 2659571 CCTCCTCGCAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGAC 2659512 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 |||| | || ||| || | |||||||| || | ||||| ||||||||||| || || Sbjct 2659511 AATG-TACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAACCTTTGCTGATCTGGGGG 2659453 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 ||| |||||||||||||| |||||| | ||| ||| |||| | ||||||||| ||| | Sbjct 2659452 AATGCCCTCTTTGTCTTG-AATTTTCGCTTTTACATTTTCAATAGTGTCAGAGGCTTCAA 2659394 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 | || | ||||| ||||| || || | |||||| || || ||||||||| Sbjct 2659393 CCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCATT 2659344 >seq1964 Length=1360 Score = 105 bits (116), Expect = 5e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| |||||||||||||| || || || || || ||||| || || | | || ||| Sbjct 263 ACGAAGCACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTACGACC 204 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || | || ||||| ||| | || | | |||||| || || || ||||| || || Sbjct 203 ATCCTCCAACTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTT 144 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 |||||| | || || ||| | || | ||||| || |||| ||||| || || || Sbjct 143 GTCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGTTCAACTTCTAGGGTGAT 84 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||||||||| | || || || || |||||||| Sbjct 83 TGTTTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 48 >seq802 Length=1346568 Score = 91.5 bits (100), Expect = 1e-13 Identities = 99/129 (77%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 29662 CTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTTTG-TTTGACAGTTTCTAC 29720 || ||||| || || || || |||||||||||||| |||||||| ||||||| |||| | Sbjct 833167 CTCTGCTGGTCTGGAGGGATTCCCTCTTTGTCTTG-AATTTTTGCTTTGACATTTTCAAT 833225 Query 29721 AGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATAT 29780 || || || |||| || || || || || ||||| || || | |||||| || || || Sbjct 833226 GGTATCCGAGGGTTCAACCTCGAGGGTGATGGTTTTCCCCGTGAGGGTTTTCACGAAAAT 833285 Query 29781 CTGCATTTT 29789 |||||| || Sbjct 833286 CTGCATCTT 833294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385201012116234