Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq3650 250 2e-61 seq2316 152 5e-32 seq593 122 9e-23 seq1964 84.2 2e-11 >seq3650 Length=1334389 Score = 250 bits (276), Expect = 2e-61 Identities = 679/1017 (67%), Gaps = 38/1017 (4%) Strand=Plus/Plus Query 18555 TAATCGACCACACCGTTTTCCCAAGTGCCGGCGACGGGACCGGTGGCCGTGCCCGCGAAT 18614 || || || ||||||| || |||||| || ||| || || || || |||| | |||| Sbjct 960558 TAGTCAACTACACCGTCTTGCCAAGTACCTTTGACTGGTCCAGTCGCGTTGCCAGTGAAT 960617 Query 18615 GGATTATCACTATCGCTCTTT---ACCCCAGTCCAACCGCGCCCGTACATTGCTACACCC 18671 ||||| | ||| || || |||||||| ||||| |||||||| ||||| ||| Sbjct 960618 GGATTGTTGTCTTCGTAATTATGAACACCAGTCCAGCCGCGTCCGTACATAGCTACGCCC 960677 Query 18672 AGTGCAATTTTGCTTGTCGGT-ACGTGTTGCGCAAGCAACGCCTCTACGGCACGATCCGC 18730 | |||| || ||| | | ||| ||| |||||||| | || || || | Sbjct 960678 ACCACAATCTT-CTTAGGGTTCACGCCTTGAGCAAGCAAATATTTCACACCAAAGTCAGT 960736 Query 18731 GCAATAAGGTTCGTCGGGTTTCCATGCAGGTGCAAACAAAGCGGTTTGATGTCCTAAATC 18790 | ||||| ||| | || ||||| || ||||| | | | || ||||| || | Sbjct 960737 GGTATAAGTTTCCTTAGGGTTCCAAGCGGGTGCGTAAAGTGGAGTCTGATGACCGAGGGT 960796 Query 18791 CGTCAT-AGACCAGGCTCCTTTAAAATCGTACGACATTA--AAAATATGGTGTCGAGGTA 18847 ||| | ||||||||| ||||||||||| || ||| | || ||||||| | | || Sbjct 960797 -GTCGTTAGACCAGGCGCCTTTAAAATCATAACTCATAAGGAAGATATGGT--CCATATA 960853 Query 18848 TTTTTGCGCTTCAGTGTAATCGACCACAGCAATCTTATCGTCGCCCGCGCTTATCGCACT 18907 ||||| |||||| |||||||||| || |||||||| || || || || || Sbjct 960854 CTTTTGAGCTTCACTGTAATCGACAACTTGGATCTTATCCCATCCAGCACTGATAGCGGA 960913 Query 18908 CGTCAAC----ATATAGTAACGATTGTGATGTACGCCTAGGGCGTCGAGCATGCCGCGAA 18963 |||| | || | || || | | | | ||| ||| | ||| | || | Sbjct 960914 GGTCAGCTCGTATTTCTTACCGGTC----TCTTCAGAAAGGTCGTTCAACATTTCACGCA 960969 Query 18964 GTTCACGCAGCAGG--ATCGTGTACGTGGCCCGATCGCGTTCGGCGTCGCCGACGTTGGG 19021 ||| || | | ||| || | || | ||||| | |||| || ||| Sbjct 960970 ATTCCTTCATTAATTCAACGTAAACATCTCCGTCT----TTCGGGCTA-CCGAGGTCGGG 961024 Query 19022 GTTAGCGCCATTGCCGCCTGGAAACTCCCAATCAATATCGACGCCATCGAAGAATTTCCA 19081 |||||| || || || || || || |||||||| || || || ||||||||||| ||||| Sbjct 961025 GTTAGCTCCCTTACCTCCAGGGAATTCCCAATCGATGTCAACACCATCGAAGAACTTCCA 961084 Query 19082 CGTTTCTAGATACTCTTGGACTGAATCGATAAA-CG-TCTGCCGTACGATCTTGTCG-TG 19138 || || | |||| || ||||| | || || ||| | | ||||||| || Sbjct 961085 GGTCAAGAGGAAATCTTTTACAGAATCAACGAAGCGATCTCTCTTCTC--CTTGTCGGTG 961142 Query 19139 CATATGGTAAAATGGGTCCGAAAGTGTCCAGCCCCCGATCGAAGGTAGCACTTTTAGATG 19198 | | | | || || || | |||||||| || ||||| |||||||| | || || | Sbjct 961143 AAGAAGA-AGAAGGGATCGGCTAGTGTCCAACCACCGATGGAAGGTAGGATCTTAAGTTC 961201 Query 19199 AGGGTTCGCCAATTTGGCTGCCATAAGTTGGCCAAAGTTGCCTTTGTACGGTTCGTTCCA 19258 ||| | || |||| | ||| || |||||||||||||||||||| ||||||||||| Sbjct 961202 AGGCCTGGCTTGTTTGAGAGACATCAGCTGGCCAAAGTTGCCTTTGTAAGGTTCGTTCCA 961261 Query 19259 TGCGCTGACA--CCTTTTTGGGGTTTCTGTATGGCCGCCCAAGGATCGTGAATGGCCACT 19316 | |||| || || || |||||||| | || ||||||||||||||||| | ||| Sbjct 961262 --GGAAGACAATCCCTTCTGTGGTTTCTGAAGAGCGGCCCAAGGATCGTGAATAGATACT 961319 Query 19317 TTGAAGTCGGCACGACCGGCACACGAACGTTGCAACGCTTCGAAACTGCCCGGGACAGTT 19376 ||||| || | || ||| ||||| | || | |||| ||||||||| || | Sbjct 961320 TTGAAATCTTCTCGGCCGCTGCACGATCTCTGAAGAGCTTGGAAACTGCCTTCGATCTCT 961379 Query 19377 TTGAGGGCATCATTGATGCCGTCGCCACCGCACATGGGCACGAAACCGTACAACAAATGC 19436 || | | || |||||||| || |||||||| || || | ||| ||||| | ||||| Sbjct 961380 TTTAAGCTGTCGTTGATGCCATCTCCACCGCAAATTGGAATGAAGCCGTATAGTAAATGA 961439 Query 19437 GACAAGTTCGGTGTGGGCACTTTATCGACGGGAAACTGTCGCGGATACACACCCCATTCG 19496 | || ||| || | || || |||||| || || | || ||| |||||||||||||| Sbjct 961440 GTCAGGTTAGGAATTGGAACACGATCGACTGGGAATTTTCTCGGGTACACACCCCATTCT 961499 Query 19497 ACAAAGTATGCACCTATAATCTTGTCC-GAGCGCTTTTCGAACCGTTTATTGTTTTC 19552 || |||||||| || | || ||| ||| || || || ||| |||| || ||||| Sbjct 961500 ACGAAGTATGCTCCAACAA-CTTTTCCAGAAGTCTGTTTGAATAGTTTGTTCTTTTC 961555 >seq2316 Length=6356476 Score = 152 bits (168), Expect = 5e-32 Identities = 903/1430 (63%), Gaps = 38/1430 (3%) Strand=Plus/Plus Query 150720 GGTTGACAACTTGAAATTCGCCCGACAAAACACGTCTCAAAAACAAATTAC-TGTGAAAC 150778 |||| ||||| || ||||| || |||||||||||||| | | || ||| ||| Sbjct 2965543 GGTTAACAACCTGGAATTCCCCAGACAAAACACGTCTTTGGTAAATGTTTGATGT-AAAT 2965601 Query 150779 GGTTCAAATGACTCGTTGTTGTTGAGTATTTGTGCGGTCGTGGCCGTCGGCATGTACGCC 150838 |||||||| || || ||||| | ||||| || || | || || ||||| || Sbjct 2965602 GGTTCAAAGGATTCATTGTTTCCCAAGATTTGGGCTGTAGACGCTGTAGGCATTGGAGCT 2965661 Query 150839 ACAAGCAATGAATTACGTAATCCGTATTTTTGTATATTTATTTTCAACTGTGACCAGTCC 150898 | | | ||||| || | || | ||| || ||| ||| || ||||||||| Sbjct 2965662 AATAAAAGCGAATTGCGCAGCCCATGTTTGGCAATTTTTTCTTTTAAAACAGACCAGTCC 2965721 Query 150899 CATAACGAAGTCGGTACCGTATTCCACAAATCGTATTGCAATATTCCTTCGCTCGCTTTG 150958 || | || || ||| ||||| || |||||||| || |||| ||| ||| Sbjct 2965722 CAGAGATCAGATGGAGTTTTATCCCACATGTCATATTGCAAAATGCCTTGGCTTGCTGGA 2965781 Query 150959 CTACCGGCAAACGTGCTATAAGGCTCACTAACAGAT-GCCAGTTCGTAACTGGCCTCGAG 151017 || || || | || |||||| ||| | | ||||||||| ||||||| || | Sbjct 2965782 CTTCCTTCATATGTACTATAAA-CTCCTTCTCTTTGCGCCAGTTCGCAACTGGCTTCTAA 2965840 Query 151018 CGCAGCATGATACACAGTTTCAGCAATTTGTTTATTCAATAGAACGGCAGCATCGCTCAC 151077 || | | ||| | ||||| ||||||| || | | || || || || | Sbjct 2965841 TGCTCCGTAATATATCGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCCTTGTCACTTTC 2965900 Query 151078 GTACGGTATGCGCAACATAACAAATGCATCGGCCAAACCTTGAATGCCTATGCCGATGGG 151137 || || ||||||| || |||||||| ||| || || ||||| | || || || || || Sbjct 2965901 ATAAGGAATGCGCATCAGAACAAATGTATCAGCTAACCCTTGCACTCCAATCCCAATTGG 2965960 Query 151138 ACGATGGCGCATATTAGAtttttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAAT 151197 | |||||||| || || || ||||| | | ||||| ||||| ||||||||| Sbjct 2965961 TCTGTGGCGCATGTTGGAATTCTTTGCTTCTGGCACTGGGTAAAAATTAACATCAATAAT 2966020 Query 151198 TTTATTCAAACTAT---TCACTACATGTTTGACCAC-----AGTGTGCAATAGTTGAAAA 151249 |||||| | | | | | || | | |||| | | | || || ||||| | Sbjct 2966021 TTTATTAAGGTTTTGTGTGATTATCTTTGTGACTTCTCTCAACTTTGTAA-AGTTGTATG 2966079 Query 151250 TCAAAAGTATCATTATTGATATATTTATTGACGGCAATCGACGCTAGATTACATACGGCA 151309 | |||| | ||| | | | | || | ||||| || |||| |||||| || ||| Sbjct 2966080 T----TTTATCTTCATTAACAAACCTGTTCAAAGCAATAGAAGCTAAATTACAAACAGCA 2966135 Query 151310 GTTTCGTCGGGCGCGCAATATTGTACTATTTCCGCACACAAATTGCTGCATTTTATCAAT 151369 ||| || | | |||| || ||||| | |||||||| |||||||| || Sbjct 2966136 ACTTCATCTGCTGAAGTGTATTCAACAATTTCTGTGCACAAATTACTGCATTTAATGGTG 2966195 Query 151370 CCGCAATTACTTTGATTGCTTTTGCGGTTGCAAGCGTCCTTGTATAACATGTACGGTGTG 151429 || ||| ||||||||||||| | ||| |||| || || |||||||| || |||||| Sbjct 2966196 CCAAGATTTTTTTGATTGCTTTTTCTGTTACAAGAATCTTTATATAACATATATGGTGTG 2966255 Query 151430 CCGGTTTCGGCTTGAATTTCTATAAT---GTTTCGCATTAATGTAACCGCGGGCATTTGC 151486 || ||||| |||| |||||| || || | || | | | | | ||| | |||| Sbjct 2966256 CCTGTTTCCACTTGTGCTTCTATGATTGCTTTCCACAGTTCT-TGAGCTCGG--ACTTGC 2966312 Query 151487 TCGCGAAACTGGCCTTT-ATCCTCATAATGTTTGTACCAGTATTCAAAGTCATCACCATA 151545 | ||| | | ||| || ||||| || || | |||||| || || || | Sbjct 2966313 TTAACAAA-TCTCTTTTCCTCTTCATATTGCCCATATAATGCTTCAAATTCTTCTCCCCA 2966371 Query 151546 CGTATCGTTGAGCTTAGGACACTCGTTAGGACACATTAATGACCATATACCGTTTTCTTC 151605 ||| || || || || | ||| |||||||| ||| || | | || ||| Sbjct 2966372 ACAGTCGGCAAGACCGGGGCAATCATGAGGGCACATTAAACTCCACATTTCATCTTTTTC 2966431 Query 151606 AACGCGTTTCATAAATATATCCGGAACCCATAATGCGTTCATCAAATCACGCGCTTTGGT 151665 ||| || |||||||| | ||| || | ||||||||| | | | || | ||| || Sbjct 2966432 AACACGCTTCATAAACAAATCTGGGATCCATAATGCATAAAATAGTTCTCTGGCTCTGAC 2966491 Query 151666 GTCTTCGCTGCCAATGTTTCGACGCATGTGTAAAACGTCCATAATGTCGCAATGCCACGG 151725 ||||| ||||| | || || | ||||| || | | || | ||||| || Sbjct 2966492 TTCTTCTTTGCCAGTATTCTTTTTCAGATCTAAAAACTCAAACACATCAGAGTGCCAGGG 2966551 Query 151726 TTCAACGTACACTGCTTGGGCGCCTTTTCG---CTTGCCACCTTGATCCACGTGACGCAC 151782 ||| | ||| | || || ||| ||| ||||| ||||| || || | | | Sbjct 2966552 TTCTAAGTAAATAGCAAATGCACCTGGTCGTTTGTTGCCTCCTTGGTCAACATACCTTGC 2966611 Query 151783 CATATTATTAAAAACTCGCAGCATTGGTAGCAGTCCGCTGGCGGTGCCGTTCGTAGAT-- 151840 ||||||| | ||||||| |||||||| || || ||| ||||| ||| | Sbjct 2966612 TGTATTATTGTACACTCGCAACATTGGTACAAGACCATTGGATACACCGTTAGTACCTGC 2966671 Query 151841 --TTTATTTTGCTGTTGCGGCCGCGTACGCTGTTCACGTTCAATCCAATACCGCCGCCGT 151898 | || | || |||| | ||| || || || | |||||| || || | Sbjct 2966672 TATATAAGTACCTTTTGC--TCTAATACAATGAACATGT--AGTCCAATGCCACCAGCTG 2966727 Query 151899 GTTTAGAGATCATGGCGCAATCGTTTAATGTGTTATAGATGCCGCGAATGCTATCGCTTT 151958 ||| ||||| | || || | |||| ||||| ||| || || |||||| || || Sbjct 2966728 ATTTTGAGATTAATGCACATTGTTTTAGTGTGTCATATATACCTTCAATGCTGTCATCTT 2966787 Query 151959 CCATGGTCAATAGAAAACATGAACTCATCTGCGGTGTCAGAGTGCCGGCAGCGAACATGG 152018 ||| | | || || || ||| || || ||| || |||| | |||| ||| | | Sbjct 2966788 TCATAGCTATGAGGAAGCAAGAAGACAATTGTGGTCTCGGAGTTGCTGCAGAGAATAATG 2966847 Query 152019 TTGGGCTTGCGTGCGTGTA-CATTTTTCTGCTCAAAAATTTATAGGATTTTATGGCACTA 152077 | || || || || || | ||||||| | ||| || || |||| || ||||| | Sbjct 2966848 TGGGACTGGCATGTGTAAAGTATTTTTCAG-ACAATAAGTTGTAGGTTTCAATGGCTGAA 2966906 Query 152078 TCAATGTCGTCTCCAAAGATTCCTAAAGCTATACGCATGTGCATATGTTG 152127 |||||||| || ||| |||||| | | | ||||| ||||||| || Sbjct 2966907 TCAATGTCTTCACCATGGATTCCAATTGAGACCCGCATCAGCATATGCTG 2966956 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 |||||||| | | ||| || || |||| ||| ||||| || || |||||||| ||| | Sbjct 2659571 CCTCCTCGCAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGAC 2659512 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | ||| | || | ||||| | ||||| || || |||||| | ||||||||| || || Sbjct 2659511 AATGTACGTCCA-TCTTCTAACTGTTTGCCGGCGAAGATCAACCTTTGCTGATCTGGGGG 2659453 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 ||||| |||||||| |||||| ||||| | ||| | ||||| | || ||| || Sbjct 2659452 AATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCAATAGTGTCAGAGGCTTCAAC 2659393 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | || || || || | ||||||||||| || ||||| Sbjct 2659392 CTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCAT 2659345 >seq593 Length=2014934 Score = 122 bits (134), Expect = 9e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 137185 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 137244 ||||||| | ||| | ||||| |||| ||||||||||| || ||||||||||| | Sbjct 755373 CCTCCTCTAAGACGGAGCACTAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAATCTGAC 755432 Query 137245 ATTGTGC-TCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | ||||| || | ||||| || ||||| |||||| |||||| | ||||| || || || Sbjct 755433 AATGTGCGTCCA-TCTTCAAGCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGGGG 755491 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 |||||||||||||| ||||| || | | ||| | ||||| | || || || Sbjct 755492 AATGCCTTCTTTGTCTTGGATTTTAGCCTTAACATTTTCAATTGTGTCAGATGGCTCAAC 755551 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 || | || | |||||||| ||||| || || ||||| || |||||| Sbjct 755552 CTCTAATGTGATAGTCTTGCCTGTCAAGGTCTTAACGAAGATCTGCATA 755600 Score = 118 bits (130), Expect = 1e-21 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 |||||||| |||||| | ||| || |||| || ||||| ||||| || ||||| || Sbjct 755144 GCCTCCTCTTAAACGAAGAACCAAGTGAAGCGTCGATTCCTTTTGAATATTGTAGTCTGA 755203 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | ||||| |||||||| || ||||| ||| |||| |||||||||||||| || || Sbjct 755204 AAGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGG 755263 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 ||||| || ||||| |||||| ||||| | || | ||||||| || || || Sbjct 755264 AATGCCCTCCTTGTCTTGAATTTTCGCTTTTACATTCTCAATTGTGTCTGATGGCTCCAC 755323 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 137411 || | || | ||||| || || | ||||| || || || ||||| Sbjct 755324 CTCCAGTGTGATAGTCTTTCCTGTTAGCGTTTTAACAAAAATCTGCAT 755371 >seq1964 Length=1360 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 137184 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 137243 ||| || || | ||| | || ||||||| ||||| || || || |||||||| ||| Sbjct 275 GCCGCCGCGGAGACGAAGCACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 216 Query 137244 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 137303 | ||| | || || | || || || ||| |||| ||||||||||| || ||||| Sbjct 215 GAGTGTACGACCATCCTCCAACTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGAGG 156 Query 137304 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCTGTGGGTTCTAC 137363 || ||||| ||||| || || || | | || | ||||| | |||||| || Sbjct 155 GATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGTTCAAC 96 Query 137364 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 137412 ||| | || | || ||||| |||| || || ||||| || |||||| Sbjct 95 TTCTAGGGTGATTGTTTTGCCAGTCAGAGTCTTGACGAAGATCTGCATA 47 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488520342256800