Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq593 179 7e-40 seq2316 141 2e-28 seq359 93.3 8e-14 seq425 91.5 3e-13 seq802 86.0 1e-11 >seq593 Length=2014934 Score = 179 bits (198), Expect = 7e-40 Identities = 177/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||| || ||| || || ||||| || || ||||| || || || || || |||| Sbjct 754915 TACCACCTCGCAGACGGAGTACCAAGTGAAGTGTTGATTCCTTTTGGATGTTGTAGTCAG 754974 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || || ||||| ||||| ||||||||||| | ||| || || ||||| | Sbjct 754975 AAAGGGTACGGCCATCCTCTAGCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGGG 755034 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| ||||| || ||||| ||||| ||||| ||||| |||||| |||||| | Sbjct 755035 GGATACCTTCTTTATCCTGGATCTTGGCTTTGACATTCTCAATGGTATCAGAAGGTTCAA 755094 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||||||||| ||||| || || || ||||| Sbjct 755095 CCTCCAAGGTGATGGTCTTGCCTGTCAAAGTCTTCACGAAAATTTGCAT 755143 Score = 179 bits (198), Expect = 7e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| | ||| || |||||||| ||||||||||||||||| || || ||||| || Sbjct 755373 CCTCCTCTAAGACGGAGCACTAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAATCTGAC 755432 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 | | | || ||||| || ||||| ||||||||||| | ||| || || ||||| || Sbjct 755433 AATGTGCGTCCATCTTCAAGCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGA 755492 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| || ||||| || || || || ||||||||||| || ||| || || || Sbjct 755493 ATGCCTTCTTTGTCTTGGATTTTAGCCTTAACATTTTCAATTGTGTCAGATGGCTCAACC 755552 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || || |||||||||||||| ||||| || || |||||||| Sbjct 755553 TCTAATGTGATAGTCTTGCCTGTCAAGGTCTTAACGAAGATCTGCAT 755599 Score = 168 bits (186), Expect = 1e-36 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 |||||||| ||||| ||||| ||||| || || ||||| || || ||||| || || || Sbjct 755145 CCTCCTCTTAAACGAAGAACCAAGTGAAGCGTCGATTCCTTTTGAATATTGTAGTCTGAA 755204 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | ||| ||||| || || || || |||||||| || | ||| |||||||| || Sbjct 755205 AGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGA 755264 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || || ||||| |||||||| || ||||||||||| ||||| || || || || || Sbjct 755265 ATGCCCTCCTTGTCTTGAATTTTCGCTTTTACATTCTCAATTGTGTCTGATGGCTCCACC 755324 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 |||| || || ||||| ||||| | ||| || ||||| ||||||||| Sbjct 755325 TCCAGTGTGATAGTCTTTCCTGTTAGCGTTTTAACAAAAATCTGCATT 755372 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| || ||||| ||||| || ||||| || || || ||||| || | Sbjct 755599 TACCACCACGGAGACGGAGTACTAAATGCAGGGTGGATTCCTTTTGGATGTTATAGTCGG 755658 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || ||||| | ||||| || || ||||| || | || || ||||| | Sbjct 755659 ACAATGTGCGTCCATCTTCCAACTGTTTACCGGCGAAGATGAGACGCTGCTGGTCTGGGG 755718 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||| ||||| |||||||| || ||||| ||||| || || ||| || | Sbjct 755719 GAATGCCCTCCTTGTCTTGGATCTTTGCCTTAACATTCTCAATTGTGTCTGAAGGCTCCA 755778 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | ||||| || || |||||||||||||| ||||| ||||| |||||||| Sbjct 755779 CCTCCAAGGTGATGGTCTTGCCTGTCAATGTCTTCACAAAAATCTGCAT 755827 Score = 136 bits (150), Expect = 8e-27 Identities = 143/188 (76%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 82623 TTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATT 82682 || || || || || ||||| || | | || || ||||| ||||| ||||||||||| Sbjct 754728 TTTTGGATGTTGTAGTCAGAAAGGGTACGGCCATCCTCTAGCTGTTTGCCAGCAAAGATC 754787 Query 82683 AGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCA 82742 | ||| || || ||||| || || |||||||| ||||| ||||| || || ||||| || Sbjct 754788 AATCTCTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCG 754847 Query 82743 ATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAAT 82802 || || || ||||||||||| || || || ||||||||||||| || || ||||| Sbjct 754848 ATGGTGTCCGAGGGTTCTACTTCTAATGTGATAGTCTTGCCTGTCAGGGTTTTAACAAAG 754907 Query 82803 ATCTGCAT 82810 |||||||| Sbjct 754908 ATCTGCAT 754915 >seq2316 Length=6356476 Score = 141 bits (156), Expect = 2e-28 Identities = 171/233 (73%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||||| || | || || ||||| || || ||||| ||||| || || || || | Sbjct 2659573 TACCTCCTCGCAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGG 2659514 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | || ||||||| ||||| || || ||||| | ||||| |||||||| | Sbjct 2659513 ACAATGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAACCTTTGCTGATCTGGGG 2659454 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || || || |||||||| || ||||||||||||||||| || ||| | ||| | Sbjct 2659453 GAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCAATAGTGTCAGAGGCTTCAA 2659394 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATT 82814 | || || ||||| || || || || | || ||||| || ||||||||| || Sbjct 2659393 CCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCATTGTT 2659341 >seq359 Length=3483218 Score = 93.3 bits (102), Expect = 8e-14 Identities = 117/158 (74%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 198292 ATATCTATTCTATTA-AACAACTCGAAAAGGCGGAAACACATGACCCTCTATGGAATGCA 198350 |||| ||| | |||| || |||| | || || ||||| ||||| || ||||| | Sbjct 2597435 ATATTTATAC-ATTAGAAAAACTAGCTAAAGCAGAAACTCATGATGAACTGTGGAACTCC 2597493 Query 198351 TCGCAAATACAGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCT 198410 | ||| |||||||| ||| ||||| || |||||| ||| | | ||||||||||||| Sbjct 2597494 GCACAACTACAGATGGTAAATGAAGGCAAGATGCATGGTTCTATCAGAATGTACTGGGGA 2597553 Query 198411 AAAAAGATACTTGAATGGACAAGAACACCGGAAGACGC 198448 || ||||| || ||||||||| || |||||||| || Sbjct 2597554 AAGAAGATTCTAGAATGGACACCAAGTCCGGAAGATGC 2597591 >seq425 Length=2757732 Score = 91.5 bits (100), Expect = 3e-13 Identities = 87/110 (79%), Gaps = 1/110 (1%) Strand=Plus/Plus Query 60332 AATTCCTTAATCCATGTTATTATGTATACTTATTATGGTATGGCGGCGTGTGGACCTATG 60391 ||||||||||| |||||||| |||||| | ||||| | | || | |||| | | Sbjct 366352 AATTCCTTAATACATGTTATCATGTATTCATATTACCTTCTTGCCAGTTTTGGAGAGAGG 366411 Query 60392 TTTAAAAAGTATTTATGGTGGAAGCGTTATCTTACTATAATGC-AATTGT 60440 |||||||| ||||||||||||||||| ||||| ||||| |||| |||||| Sbjct 366412 TTTAAAAAATATTTATGGTGGAAGCGATATCTAACTATCATGCAAATTGT 366461 >seq802 Length=1346568 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 82686 CTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATC 82745 || || || |||||||| ||||| || || |||||||| |||||||| ||||||||||| Sbjct 833167 CTCTGCTGGTCTGGAGGGATTCCCTCTTTGTCTTGAATTTTTGCTTTGACATTTTCAATG 833226 Query 82746 GTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATC 82805 ||||| ||||| || || | || || || || || || | || || || || ||| Sbjct 833227 GTATCCGAGGGTTCAACCTCGAGGGTGATGGTTTTCCCCGTGAGGGTTTTCACGAAAATC 833286 Query 82806 TGCAT 82810 ||||| Sbjct 833287 TGCAT 833291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981778466393286