Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq3650 286 3e-72 seq3450 134 1e-26 seq1964 131 2e-25 seq593 118 1e-21 seq2316 100 3e-16 seq802 91.5 1e-13 >seq3650 Length=1334389 Score = 286 bits (316), Expect = 3e-72 Identities = 649/966 (67%), Gaps = 15/966 (2%) Strand=Plus/Minus Query 24800 GCGTACTTTGTCGAGTGGGGTGTGTACCCGCGCCAGTTTCCCGTCGACAAGGTGCCCGCG 24859 || ||||| || || ||||||||||||||| | | || || ||||| || || Sbjct 961510 GCATACTTCGTAGAATGGGGTGTGTACCCGAGAAAATTCCCAGTCGATCGTGTTCCAATT 961451 Query 24860 CCCAACCTCTCGCACTTGCTCTACGGCTTTGTGCCCATCTGCGGCGGCGCGGGCATCAAC 24919 || ||||| | || || || |||||||| | || || ||||| || | ||||||||| Sbjct 961450 CCTAACCTGACTCATTTACTATACGGCTTCATTCCAATTTGCGGTGGAGATGGCATCAAC 961391 Query 24920 GATGCGCTAAAAACTGTGCCG-GGCAGCTTCGAGGCGCTGCAACGATCGTGCGCCGGCCG 24978 || ||| |||| | | ||||| ||| | || || || |||||||| |||||| Sbjct 961390 GACA-GCTTAAAAGAGATCGAAGGCAGTTTCCAAGCTCTTCAGAGATCGTGCAGCGGCCG 961332 Query 24979 CGCCGACTTCAAGGTGGCCATCCACGATCCGTGGGCGGCCATACAGAAACCGCAGAAAGG 25038 | || ||||| || | || |||||||| ||||| || | |||||||| ||||| || Sbjct 961331 AGAAGATTTCAAAGTATCTATTCACGATCCTTGGGCCGCTCTTCAGAAACCACAGAAGGG 961272 Query 25039 CGTGTCCGCGTGGAACGAGCCGTACAAGGGCAACTTTGGCCAGCTGATGGCGCTGAAGCG 25098 |||| | |||||||| || ||||| ||||||||||||||||||||| | || || | Sbjct 961271 ATTGTCTTCCTGGAACGAACCTTACAAAGGCAACTTTGGCCAGCTGATGTCTCTCAAACA 961212 Query 25099 CGCCTACCCGCACCTCAAAGTGCTGCCCTCGATCGGCGGCTGGACGCTGTCCGACCCGTT 25158 ||| || | || || | || || || ||||| || ||||| || |||| || || Sbjct 961211 AGCCAGGCCTGAACTTAAGATCCTACCTTCCATCGGTGGTTGGACACTAGCCGATCCCTT 961152 Query 25159 CTTCCACATGCACGACAAGGCGGCGCGCCAGA-CG-TTTATCGACTCGGTGCAAGAGTAC 25216 |||| | | |||||||| | | | ||| || || | || || || |||| | | Sbjct 961151 CTTCTTCTTCACCGACAAGGAGAAGAG--AGATCGCTTCGTTGATTCTGTAAAAGATTTC 961094 Query 25217 CTCGTCACCTGGAAGTTCTTTGACGGCGTCGACCTCGATTGGGAGTTTCCCGGCGGCAAG 25276 ||| | |||||||||||||| || || || ||| |||||||||| || || || || ||| Sbjct 961093 CTCTTGACCTGGAAGTTCTTCGATGGTGTTGACATCGATTGGGAATTCCCTGGAGGTAAG 961034 Query 25277 GGCGCCAACCCGGACGTGGGCAACGCCGAGCGCGATCGCGCCACCTACACTACCCTGTTG 25336 || || ||||| ||| | || | | |||| || | | ||| | | || Sbjct 961033 GGAGCTAACCCCGACCTCGGTAGC-CCGA--AAGACGGAGATGTTTACGTTGAATTAATG 960977 Query 25337 GCGGAGCTGCGCGCGATGCTCGACGCGCTCGGTGCCCACCAAAACCG---CCACTACCTG 25393 ||| |||| | ||| | ||| || | | | | | | | | ||| | Sbjct 960976 AAGGAATTGCGTGAAATGTTGAACGACCT---TTCTGAAGAGACCGGTAAGAAATACGAG 960920 Query 25394 CTCACTAGCGCGATTAGCGCGGGCAACGACAAGATCGCCGTCGTCGACTACACTGAGGCG 25453 || || ||| || || || || || |||||| || ||||| |||| ||| || Sbjct 960919 CTGACCTCCGCTATCAGTGCTGGATGGGATAAGATCCAAGTTGTCGATTACAGTGAAGCT 960860 Query 25454 CAAAAGTATCTCGATCTGATATTCCTCATGTCGTACGATTTTAAGGGCGGCTGGTCGCTC 25513 ||||||||| | || | || ||||| ||| || |||||||| |||| |||||| | Sbjct 960859 CAAAAGTATATGGACCATATCTTCCTTATGAGTTATGATTTTAAAGGCGCCTGGTCTAAC 960800 Query 25514 AACGAGCTCGGTCATCAGACGGCGCTTTACGCGCCCCCGTGGCGGCCCGACGAACCGTAC 25573 || |||||||||||||| | |||||||| ||| | ||| || | ||| | || Sbjct 960799 GACACCCTCGGTCATCAGACTCCACTTTACGCACCCGCTTGGAACCCTAAGGAAACTTAT 960740 Query 25574 TGCGCGGACCGCGCGGTCGAGGCGCTGCTCGCGCAACACGTGCCCAAGAACAAGATTGTG 25633 | | ||| | || | |||| || ||| |||| | || ||||||||| Sbjct 960739 ACCACTGACTTTGGTGTGAAATATTTGCTTGCTCAAGGCGTGAACCCTAAGAAGATTGTG 960680 Query 25634 CTGGGCGTTGCCATGTACGGCCGCGGCTGGACGGGCGTAGCGAGCGACGACAGCGACAAT 25693 ||||||| || |||||||| ||||||||||| || || | |||| | ||||| Sbjct 960679 GTGGGCGTAGCTATGTACGGACGCGGCTGGACTGGTGTTCATAATTACGAAGACAACAAT 960620 Query 25694 CCATTCTTGGGCACCGCCACCGGTCCCGTCCCCGGCACCTGGGAGGACGGCGTCGTCGAC 25753 |||||| |||| ||| || || || ||| || || ||| | ||||| || || ||| Sbjct 960619 CCATTCACTGGCAACGCGACTGGACCAGTCAAAGGTACTTGGCAAGACGGTGTAGTTGAC 960560 Query 25754 TATCGA 25759 ||| || Sbjct 960559 TATAGA 960554 >seq3450 Length=502752 Score = 134 bits (148), Expect = 1e-26 Identities = 115/142 (81%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 116473 CACGGCTTCCACGTGCACGAGTTTGGCGACACCAGCAACGGCTGCACCTCCGCCGGCGAA 116532 || || ||||| ||||| |||||||| |||| || ||||||||||| |||||||||| | Sbjct 192491 CATGGTTTCCATGTGCATGAGTTTGGTGACAACACAAACGGCTGCACGTCCGCCGGCGCA 192432 Query 116533 CACTTCAACCCCACCGGCCAGGACCACGGCGCGCCCAACGCCGCCGTTCGTCACGTCGGT 116592 ||||||||||| ||||| ||||||||||||| |||| |||| || || ||||| Sbjct 192431 CACTTCAACCCAGGGAAGCAGGAGCACGGCGCGCCCACCGCCACCGTGCGCCATGTCGGC 192372 Query 116593 GACCTGGGCAACATTGAGGCCA 116614 || || |||||||| ||||||| Sbjct 192371 GATCTCGGCAACATCGAGGCCA 192350 >seq1964 Length=1360 Score = 131 bits (144), Expect = 2e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAG--TCCTCGA 133512 ||||| | || ||||| ||||| || ||||| ||| | ||| |||| ||||| | Sbjct 253 AAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGA--GTGTACGACCATCCTCCA 196 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 ||||||||| || | ||||| || |||||||| |||||||| ||||||||||| || Sbjct 195 ACTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGGA 136 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||| | | ||| | ||||| | ||| || || || | ||||| ||||||| Sbjct 135 TCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGTTCAACTTCTAGGGTGATTGTTTTGC 76 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | |||||||| || ||||| |||||||| Sbjct 75 CAGTCAGAGTCTTGACGAAGATCTGCAT 48 >seq593 Length=2014934 Score = 118 bits (130), Expect = 1e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAG 133513 ||||| | |||||| || || || || || || ||| || ||| | | | || || | Sbjct 755622 AAATGCAGGGTGGATTCCTTTTGGATGTTATAGTCGGACAATGTGCGTCCA-TCTTCCAA 755680 Query 133514 CTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGAT 133573 ||| || || ||| | ||||| ||||||||||| || || ||||| |||||||| ||| Sbjct 755681 CTGTTTACCGGCGAAGATGAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGAT 755740 Query 133574 CTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCC 133633 |||| ||| | | ||||| ||||| | |||||||| || | ||||| ||| ||||| Sbjct 755741 CTTTGCCTTAACATTCTCAATTGTGTCTGAAGGCTCCACCTCCAAGGTGATGGTCTTGCC 755800 Query 133634 GGTCAGAGTTTTTACGAAAATCTGCAT 133660 |||| || || || ||||||||||| Sbjct 755801 TGTCAATGTCTTCACAAAAATCTGCAT 755827 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || || || || || |||||||| || | ||| ||| | || ||||||||||| || Sbjct 755175 GTCGATTCCTTTTGAATATTGTAGTCTGAAAGTGTGCGACCA-TCTTCGAGCTGCTTACC 755233 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGC-T 133581 ||| | || || || ||||| || || || ||||| |||||||| ||| ||| || | Sbjct 755234 CGCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCCTCCTTGTC-TTGAATTTTCGCTT 755292 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| | |||||||| || | |||| || || || || || | Sbjct 755293 TTACATTCTCAATTGTGTCTGATGGCTCCACCTCCAGTGTGATAGTCTTTCCTGTTAGCG 755352 Query 133642 TTTTTACGAAAATCTGCAT 133660 |||| || ||||||||||| Sbjct 755353 TTTTAACAAAAATCTGCAT 755371 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 133506 TCCTCGAGCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTG 133565 ||||| ||||| ||||| || | || | | ||||||||| || ||||| ||||||||| Sbjct 754761 TCCTCTAGCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGGATACCTTCCTTG 754820 Query 133566 TCGGTGATCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACG 133625 || |||||| ||| | | ||| | ||||| | ||| || || || | |||| Sbjct 754821 TCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGTTCTACTTCTAATGTGATA 754880 Query 133626 GTTTTGCCGGTCAGAGTTTTTACGAAAATCTGCAT 133660 || ||||| ||||| ||||| || || |||||||| Sbjct 754881 GTCTTGCCTGTCAGGGTTTTAACAAAGATCTGCAT 754915 >seq2316 Length=6356476 Score = 100 bits (110), Expect = 3e-16 Identities = 435/682 (64%), Gaps = 7/682 (1%) Strand=Plus/Plus Query 148311 GTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATG 148370 ||||| |||||||| || || ||||| ||||| || || || || | || || ||||| Sbjct 2965596 GTAAATGGTTCAAAGGATTCATTGTTTCCCAAGATTTGGGCTGTAGACGCTGTAGGCATT 2965655 Query 148371 TACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCC 148430 |||| | ||||| ||||||| || | || ||||| || | | | | | Sbjct 2965656 GGAGCTAATAAAAGCGAATTGCGCAGCCCATGTTTGGCAATTTTTTCTTTTAAAACAGAC 2965715 Query 148431 CAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTA 148490 ||||||||||| || || || | ||||||||| || |||| |||||| |||| Sbjct 2965716 CAGTCCCAGAGATCAGATGGAGTTTTATCCCACATGTCATATTGCAAAATGCCTTGGCTT 2965775 Query 148491 GCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCC 148550 || || || || || || | || || ||| | |||||||||||| || || Sbjct 2965776 GCTGGACTTCCTTCATATGTACTATAAACTCCTTCTCTTTGCGCCAGTTCGCAACTGGCT 2965835 Query 148551 TCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCG 148610 || | || ||||| || ||||| ||| ||||| ||| || ||| || Sbjct 2965836 TCTAATGCTCCGTAATATATCGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCCTTGTCA 2965895 Query 148611 CTTTCGTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCA 148670 ||||| || || || |||| | | ||||| | || || | || || || || | ||| Sbjct 2965896 CTTTCATAAGGAATGCGCATCAGAACAAATGTATCAGCTAACCCTTGCACTCCAATCCCA 2965955 Query 148671 ATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCG-AGCGGATAGTGGTTGCGGTC 148729 || || | ||| |||||||| | | ||| | | || || || || Sbjct 2965956 ATTGGTCTGTGGCGCATGTTGGA-ATTCTTTGCTTCTGGCACTGGGTAAAAATTAACATC 2966014 Query 148730 GATGATCTTGTCAAGATTGCGCACCACCACCTTTGT-AATTCTGCGCAGCAATTCAAAAT 148788 || || || | ||| || | | | |||||| | |||| | || | | ||| | Sbjct 2966015 AATAATTTTATTAAGGTTTTGTGTGATTATCTTTGTGACTTCT-CTCAACTTTGTAAAGT 2966073 Query 148789 CGTACTTGTCATCTAC---GATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACACGG 148845 ||| | | |||| | | | | ||||| || ||||| |||| ||| || || | Sbjct 2966074 TGTATGTTTTATCTTCATTAACAAACCTGTTCAAAGCAATAGAAGCTAAATTACAAACAG 2966133 Query 148846 CCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCA 148905 | ||||| | | |||| || || || || | ||||| ||| |||||||| || Sbjct 2966134 CAACTTCATCTGCTGAAGTGTATTCAACAATTTCTGTGCACAAATTACTGCATTTAATGG 2966193 Query 148906 CGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTC 148965 ||| | || ||||||||||| || ||||| || | || || || | ||| || ||| Sbjct 2966194 TGCCAAGATTTTTTTGATTGCTTTTTCTGTTACAAGAATCTTTATATAACATATATGGTG 2966253 Query 148966 CGCCAGTTTCCACCTGCGTTTC 148987 ||| |||||||| || | ||| Sbjct 2966254 TGCCTGTTTCCACTTGTGCTTC 2966275 >seq802 Length=1346568 Score = 91.5 bits (100), Expect = 1e-13 Identities = 98/127 (77%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 133535 CCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT-GAGCTGCTCAA 133593 || ||||||||| |||||||| || || ||||| ||| |||||||| || | |||| Sbjct 833166 CCTCTGCTGGTCTGGAGGGATTCCCTCTTTGTCT-TGAATTTTTGCTTTGACATTTTCAA 833224 Query 133594 CCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACGAAAA 133653 || || | ||| || || |||| ||||| |||||| || || || ||||| ||||||| Sbjct 833225 TGGTATCCGAGGGTTCAACCTCGAGGGTGATGGTTTTCCCCGTGAGGGTTTTCACGAAAA 833284 Query 133654 TCTGCAT 133660 ||||||| Sbjct 833285 TCTGCAT 833291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483397390347760