Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq2316 259 1e-63 seq447 96.9 8e-15 >seq2316 Length=6356476 Score = 259 bits (286), Expect = 1e-63 Identities = 474/691 (69%), Gaps = 5/691 (1%) Strand=Plus/Minus Query 110469 CATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTT 110528 ||||| | ||| || |||| |||| |||| || ||||||| |||||||||| Sbjct 2966860 CATGCCAGTCCCACATTATTCTCTGCAGCAACTCCGAGACCACAATTGTCTTCTTGCTTC 2966801 Query 110529 CTTCTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCT 110588 || ||| || || ||||| ||||||||||| ||||| | || ||| || ||| Sbjct 2966800 CTCATAGCTATGAAAGATGACAGCATTGAAGGTATATATGACACACTAAAACAATGTGCA 2966741 Query 110589 CTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGA 110648 | || || ||| |||| || ||||| | || |||||| |||| | ||||||| Sbjct 2966740 TTAATCTCAAAATCAGCTGGTGGCATTGGACTACATGTTCATTGTATTAGAGCAAAAGGT 2966681 Query 110649 GCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTC 110708 | |||| ||| | || |||| || | ||| ||||| |||||||| |||| | | Sbjct 2966680 ACTTATATAGCAGGTACTAACGGTGTATCCAATGGTCTTGTACCAATGTTGCGAGTGTAC 2966621 Query 110709 AACGACACTGCAAAATATGTGAATCAAGGTGGTAAGA---GAAATGGCTCATTTGCTATC 110765 || | || |||| ||||| | ||||| || || | || || |||||||||| Sbjct 2966620 AATAATACAGCAAGGTATGTTGACCAAGGAGGCAACAAACGACCAGGTGCATTTGCTATT 2966561 Query 110766 TATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGA 110825 || | ||||| ||||| || ||| | ||||| || ||||| || || ||| || Sbjct 2966560 TACTTAGAACCCTGGCACTCTGATGTGTTTGAGTTTTTAGATCTGAAAAAGAATACTGGC 2966501 Query 110826 TTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATG 110885 |||||| ||||| | || ||||||||||| | ||||| ||||||| || ||| Sbjct 2966500 AAAGAAGAAGTCAGAGCCAGAGAACTATTTTATGCATTATGGATCCCAGATTTGTTTATG 2966441 Query 110886 AAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCTGGTCTA 110945 || |||||| || || ||| |||||| | | ||||| |||||| || || ||||| Sbjct 2966440 AAGCGTGTTGAAAAAGATGAAATGTGGAGTTTAATGTGCCCTCATGATTGCCCCGGTCTT 2966381 Query 110946 TCTGA-TGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAA 111004 | || ||| | ||| |||| ||||||| | || | |||||||| | ||| | Sbjct 2966380 GCCGACTGT-TGGGGAGAAGAATTTGAAGCATTATATGGGCAATATGAAGAGGAAAAGAG 2966322 Query 111005 GTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGA 111064 ||| || ||| | | |||||||||||| ||| |||| | ||| ||||||| || Sbjct 2966321 ATTTGTTAAGCAAGTCCGAGCTCAAGAACTGTGGAAAGCAATCATAGAAGCACAAGTGGA 2966262 Query 111065 AACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAA 111124 ||| || || || ||||| || ||||||||| | ||| | ||| ||||||| || Sbjct 2966261 AACAGGCACACCATATATGTTATATAAAGATTCTTGTAACAGAAAAAGCAATCAAAAAAA 2966202 Query 111125 TTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 | | || || ||||| | |||||||||||| Sbjct 2966201 TCTTGGCACCATTAAATGCAGTAATTTGTGC 2966171 Score = 93.3 bits (102), Expect = 1e-13 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 112576 AAGTGACAAAAGTTATTACACGTAACCTAAATAAAATTATTGACAAAACGACCTATCCAA 112635 |||| ||||| | || |||| ||||| |||||||||||||| | || ||| Sbjct 2966055 AAGTCACAAAGATAATCACACAAAACCTTAATAAAATTATTGATGTTAATTTTTACCCAG 2965996 Query 112636 TTCAAAAAGCAAAACATTCTAATAACAAGCATAGACCAATTGGCATTGGCGTACAAGGAT 112695 | | | ||||||| |||| || | || ||||||||||| ||||| || ||||| | Sbjct 2965995 TGCCAGAAGCAAAGAATTCCAACATGCGCCACAGACCAATTGGGATTGGAGTGCAAGGGT 2965936 Query 112696 TAGCTGATGTATTTATGATGATGCGAATTCCTTTTGATTCTGACCGTGC---TAAATTCT 112752 |||||||| |||| | ||||||| ||||||| ||| |||| || |||| || Sbjct 2965935 TAGCTGATACATTTGTTCTGATGCGCATTCCTTATGAAAGTGACAAGGCAATTAAA--CT 2965878 Query 112753 TAAATGAAAAGATTTTCGAAACAATCTATTTCG 112785 | || || | || |||||||| || |||| || Sbjct 2965877 T-AACCAACAAATCTTCGAAACGATATATTACG 2965846 >seq447 Length=7652121 Score = 96.9 bits (106), Expect = 8e-15 Identities = 133/185 (72%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||||| | || |||||| |||| | ||||| |||| || | || || || ||| Sbjct 2005409 AGACATTTAAGAGATGATGATTTGGTTGTATTCAACCGGCAGCCTACCCTCCACAAGATG 2005468 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 |||||||| ||| | || ||||| | || | | ||||| || | ||| | ||| Sbjct 2005469 AGTATGATGGGTCACAGGGTGAAAGTTCTGCCTTGGTCAACATTCCGTATGAATTTGAGT 2005528 Query 305426 GCTTGTACG---CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCT 305482 ||||| ||||| ||||| |||||||||||||||||||||||| | ||||| || Sbjct 2005529 ---TGTACATCTCCTTACAATGCTGATTTTGATGGAGATGAAATGAATTTACATGTCCCA 2005585 Query 305483 CAATC 305487 || || Sbjct 2005586 CAGTC 2005590 Score = 91.5 bits (100), Expect = 3e-13 Identities = 132/185 (71%), Gaps = 6/185 (3%) Strand=Plus/Plus Query 305306 AGACATTTGAATGACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATG 305365 |||||| | | || |||||| |||| | ||||| |||| || | || || || ||| Sbjct 2011822 AGACATCTAAGAGATGATGATTTGGTTATATTCAACCGGCAGCCTACCCTCCACAAGATG 2011881 Query 305366 TCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTGACATTTCGATTAAATGTAAGT 305425 |||||||| ||| | || ||||| | || | | ||||| || | ||| | ||| Sbjct 2011882 AGTATGATGGGTCACAGGGTGAAAGTTCTGCCTTGGTCAACATTCCGTATGAATTTGAGT 2011941 Query 305426 GCTTGTACG---CCTTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCT 305482 ||||| ||||| ||||| |||||||||||||||||||||||| | ||||| || Sbjct 2011942 ---TGTACATCTCCTTACAATGCTGATTTTGATGGAGATGAAATGAATTTACATGTCCCA 2011998 Query 305483 CAATC 305487 || || Sbjct 2011999 CAGTC 2012003 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186753891804914