Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq2316 120 2e-22 seq1964 111 1e-19 seq593 109 4e-19 >seq2316 Length=6356476 Score = 120 bits (132), Expect = 2e-22 Identities = 172/240 (72%), Gaps = 2/240 (1%) Strand=Plus/Minus Query 33516 ATCGTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTA 33575 ||| | ||| |||| || | |||||||| || || || || || || |||||||| Sbjct 2659578 ATCATTACCTCCTCGCAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTA 2659519 Query 33576 ATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATC 33635 ||||| | ||| ||| | || || || ||||| ||||| || ||||| | |||||||| Sbjct 2659518 GTCGGACAATGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAACCTTTGCTGATC 2659459 Query 33636 TTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTG 33694 | | || | || |||||||| ||||||| ||| | ||| ||| ||||| | Sbjct 2659458 TGGGGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTA-CATTTTCAATAGTGTCAGAGG 2659400 Query 33695 ATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTTG 33754 ||| || || | ||| || |||||||| || | |||||||| ||||||||||| |||| Sbjct 2659399 CTTCAACCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCATTGTTG 2659340 >seq1964 Length=1360 Score = 111 bits (122), Expect = 1e-19 Identities = 157/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 33534 ACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTC 33593 ||| | ||||||||| ||||| ||| || || |||||||| ||||||||||| || | Sbjct 263 ACGAAGCACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTACGACC 204 Query 33594 GTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTT 33653 || ||||| || || |||||||| || | ||| ||||| ||| | || | |||||| || Sbjct 203 ATCCTCCAACTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTT 144 Query 33654 GTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCACGTCAACCGTGA 33712 ||| || || | | ||||| || | |||||| | ||| || || | |||| Sbjct 143 GTCTTGGATCTT-GGCCTTAACATTCTCGATGGTGTCCGAGGGTTCAACTTCTAGGGTGA 85 Query 33713 TCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | ||||| || || | || || || |||||||||||| Sbjct 84 TTGTTTTGCCAGTCAGAGTCTTGACGAAGATCTGCATA 47 >seq593 Length=2014934 Score = 109 bits (120), Expect = 4e-19 Identities = 171/241 (71%), Gaps = 4/241 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || || ||||| | ||| | ||| || || ||||| ||||| || ||| Sbjct 755361 AAAATCTGCATTCCTCCTCTAAGACGGAGCACTAAGTGAAGAGTAGATTCTTTCTGGATG 755420 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 |||||||| || | ||||||| | || || | ||||| || ||||| ||||| | |||| Sbjct 755421 TTGTAATCTGACAATGTGCGTCCATCTTCAAGCTGTTTGCCAGCAAAGATCAATCTCTGC 755480 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || ||| | || | ||||||||||| ||||| | | ||||| || | ||||| Sbjct 755481 TGGTCTGGGGGAATGCCTTCTTTGTCTTGGATTTT-AGCCTTAACATTTTCAATTGTGTC 755539 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || || || | ||||| || || ||||| || || || || ||||||||||| Sbjct 755540 AGATGGCTCAACCTCTAATGTGATAGTCTTGCCTGTCAAGGTCTTAACGAAGATCTGCAT 755599 Query 33750 A 33750 | Sbjct 755600 A 755600 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/190 (71%), Gaps = 2/190 (1%) Strand=Plus/Plus Query 33562 TTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATC 33621 ||||| |||||||| || || || || || | || || | ||||| || ||||| ||| Sbjct 754728 TTTTGGATGTTGTAGTCAGAAAGGGTACGGCCATCCTCTAGCTGTTTGCCAGCAAAGATC 754787 Query 33622 AAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC 33681 || | |||||| ||| | || | |||||| ||||| || || || ||||| || Sbjct 754788 AATCTCTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTTGGCCTT-AACATTCTC 754846 Query 33682 -ACGGTGTCGCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAA 33740 | |||||| | ||| || || | ||||| || || ||||| | ||||| ||||| Sbjct 754847 GATGGTGTCCGAGGGTTCTACTTCTAATGTGATAGTCTTGCCTGTCAGGGTTTTAACAAA 754906 Query 33741 GATCTGCATA 33750 |||||||||| Sbjct 754907 GATCTGCATA 754916 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328688480446080