Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq2316 129 1e-24 seq593 113 1e-19 seq1964 109 1e-18 >seq2316 Length=6356476 Score = 129 bits (142), Expect = 1e-24 Identities = 155/208 (75%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 ||||| ||||| || ||||| || || || || || ||| |||||||| | ||| Sbjct 2659360 AAAACCCTCACGGGTAAAACCATAACGTTAGAGGTTGAAGCCTCTGACACTATTGAAAAT 2659419 Query 206245 GTAAA-GCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTT 206303 ||||| || ||| |||||||| ||||| || ||| || || ||||| | ||||| Sbjct 2659420 GTAAAAGCGAAA-ATTCAAGACAAAGAGGGCATTCCCCCAGATCAGCAAAGGTTGATCTT 2659478 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| || ||||| ||||||||| | || ||| |||| |||||| ||||||| || || Sbjct 2659479 CGCCGGCAAACAGTTAGAAGATGGACGTACATTGTCCGACTACAACATCCAGAAGGAATC 2659538 Query 206364 TACTCTTCACCTTGTTTTGAGACTTCGA 206391 || |||||| | || ||||| || ||| Sbjct 2659539 AACACTTCACTTGGTGTTGAGGCTGCGA 2659566 >seq593 Length=2014934 Score = 113 bits (124), Expect = 1e-19 Identities = 133/180 (74%), Gaps = 0/180 (0%) Strand=Plus/Minus Query 206194 ACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCAGTAAAGCAA 206253 ||||| || || ||||| || || || || ||||||||| | ||| || ||| Sbjct 755575 ACAGGCAAGACTATCACATTAGAGGTTGAGCCATCTGACACAATTGAAAATGTTAAGGCT 755516 Query 206254 AAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTCGCCGGAAAG 206313 || || ||||| |||||||| ||| || ||| || ||| | ||||| || || || Sbjct 755515 AAAATCCAAGACAAAGAAGGCATTCCCCCAGACCAGCAGAGATTGATCTTTGCTGGCAAA 755456 Query 206314 CAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACTCTTCAC 206373 ||| | ||||||||| | || ||| | ||||||||| |||||||||| |||||||||||| Sbjct 755455 CAGCTTGAAGATGGACGCACATTGTCAGATTACAACATCCAGAAAGAATCTACTCTTCAC 755396 Score = 104 bits (114), Expect = 6e-17 Identities = 143/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| || || | ||||| || || ||||| ||||| ||||| ||| ||| Sbjct 755824 CAGATTTTTGTGAAGACATTGACAGGCAAGACCATCACCTTGGAGGTGGAGCCTTCAGAC 755765 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 ||| | || || ||| |||||| ||||| || || || ||| || ||| || Sbjct 755764 ACAATTGAGAATGTTAAGGCAAAGATCCAAGACAAGGAGGGCATTCCCCCAGACCAGCAG 755705 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| || ||||||||||||||| | || ||| |||| || ||| || Sbjct 755704 CGTCTCATCTTCGCCGGTAAACAGTTGGAAGATGGACGCACATTGTCCGACTATAACATC 755645 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 || || || || || || || Sbjct 755644 CAAAAGGAATCCACCCTGCA 755625 >seq1964 Length=1360 Score = 109 bits (120), Expect = 1e-18 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| || ||| || || || || ||||| ||||| | ||||| ||| || ||| Sbjct 51 CAGATCTTCGTCAAGACTCTGACTGGCAAAACAATCACCCTAGAAGTTGAACCCTCGGAC 110 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || |||| || ||| ||||| ||||| || ||||| || || ||| ||| Sbjct 111 ACCATCGAGAATGTTAAGGCCAAGATCCAAGACAAGGAAGGTATCCCTCCAGACCAGCAA 170 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||| ||||| ||||||||||| ||||| | || | |||| |||||| || Sbjct 171 CGTCTCATCTTTGCCGGCAAGCAGTTGGAGGATGGTCGTACACTCTCCGACTACAACATC 230 Query 206353 CAGAAAGAGTCTACTCTTCA 206372 ||||| |||||||||||||| Sbjct 231 CAGAAGGAGTCTACTCTTCA 250 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181762139585954