Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq3650 176 4e-39 seq2316 102 8e-17 seq3450 98.7 9e-16 seq593 95.1 1e-14 seq1964 84.2 2e-11 >seq3650 Length=1334389 Score = 176 bits (194), Expect = 4e-39 Identities = 512/778 (66%), Gaps = 23/778 (3%) Strand=Plus/Minus Query 24817 AAAATTGTAGCGGCTTACTTCGTCGAGTGGGGCGTGTATCAGCGGCAGTTTTCCGTCGAC 24876 ||| |||| | || |||||||| || ||||| ||||| | | | | || | ||||| Sbjct 961522 AAAGTTGTTGGAGCATACTTCGTAGAATGGGGTGTGTACCCGAGAAAATTCCCAGTCGAT 961463 Query 24877 AAAGTGCCCGCGCCCAATTTGTCGCACTTGCTATACGCTTTCGTGCCGATATGCGGCGGC 24936 || || || || || | || || ||||||| ||| | || || ||||| || Sbjct 961462 CGTGTTCCAATTCCTAACCTGACTCATTTACTATACGGCTTCATTCCAATTTGCGGTGGA 961403 Query 24937 GAGGGCATAAACGACGCTCTCAAAACAGTTCCC-GGTAGTTTTGAGGCGCTGCAGCGCTC 24995 || ||||| |||||| || |||| || || || ||||| | || || ||| | || Sbjct 961402 GATGGCATCAACGACAG-CTTAAAAGAGATCGAAGGCAGTTTCCAAGCTCTTCAGAGATC 961344 Query 24996 GTGCGCCGGGCGCGACGATTTTAAGGTAACCATTCACGACCCCTGGGCCGCCATCCAGAA 25055 |||| ||| || || ||||| || ||| | |||||||| || |||||||| | ||||| Sbjct 961343 GTGCAGCGGCCGAGAAGATTTCAAAGTATCTATTCACGATCCTTGGGCCGCTCTTCAGAA 961284 Query 25056 ACCGCAGAAAGGCGTCTCCACTTGGAACGAGCCGTACAAAGGCAACTTTGGACAATTAAT 25115 ||| ||||| || | || | |||||||| || ||||||||||||||||| || | || Sbjct 961283 ACCACAGAAGGGATTGTCTTCCTGGAACGAACCTTACAAAGGCAACTTTGGCCAGCTGAT 961224 Query 25116 GGGCCTGAAATTAGCTAATCCACACTTGAAGGTGCTGGCGTCGATCGGCGGCTGGACCTT 25175 | || ||| ||| | || | | ||| | || | || ||||| || ||||| | Sbjct 961223 GTCTCTCAAACAAGCCAGGCCTGAACTTAAGATCCTACCTTCCATCGGTGGTTGGACACT 961164 Query 25176 GTCAGATCCATTCT-----TTCACATGCATGACGCGACCGTGCGTCAAACG-TTCATCGA 25229 | ||||| |||| ||||| || | | || | | | | || ||| | || Sbjct 961163 AGCCGATCCCTTCTTCTTCTTCACCGACA--AGGAGA-AGAGAG---ATCGCTTCGTTGA 961110 Query 25230 TTCCGTCGAGGACTTTCTCTTGACTTGGAAGTTTTTCGACGGCGTCGACATTGACTGGGA 25289 ||| || | || || |||||||| |||||||| ||||| || || ||||| || ||||| Sbjct 961109 TTCTGTAAAAGATTTCCTCTTGACCTGGAAGTTCTTCGATGGTGTTGACATCGATTGGGA 961050 Query 25290 GTTTCCGGGCGGCAAAGGGGCCAATCCTCACGTCGGCAACGCCGAGCGCGACCGCGCCAC 25349 || || || || || || || || || || |||| | | |||| ||| | | Sbjct 961049 ATTCCCTGGAGGTAAGGGAGCTAACCCCGACCTCGGTAGC-CCGA--AAGACGGAGATGT 960993 Query 25350 ATACACCGCCCTCCTGCAGGAGCTGCGCAATCGACTGGACGCGCTCGGCGCTCGCACCGA 25409 ||| | | || |||| |||| | || ||| || | |||| Sbjct 960992 TTACGTTGAATTAATGAAGGAATTGCGTGAAATGTTGAACGACCTTTCTGAAGAGACCGG 960933 Query 25410 TCGCTACTATCCGCTGACATCGGCCATCAGCGCGGGCAACGACAAGATCGCCGTGGTCGA 25469 | | || |||||| || || ||||| || || || |||||| || ||||| Sbjct 960932 TAAGAAATACGAGCTGACCTCCGCTATCAGTGCTGGATGGGATAAGATCCAAGTTGTCGA 960873 Query 25470 TTACTCCGAAGCGCAAAAGTACCTCGACACAATTTTCTTGATGACATACGATTTTAAAGG 25529 |||| ||||| |||||||| | ||| || ||| | |||| || ||||||||||| Sbjct 960872 TTACAGTGAAGCTCAAAAGTATATGGACCATATCTTCCTTATGAGTTATGATTTTAAAGG 960813 Query 25530 CGCGTGG---AGCAACACCGATTTGGGCCATCAGGCGGCACTCTTCGCGCCCGCGTGG 25584 ||| ||| | | ||||| | || |||||| | |||| | ||| ||||| ||| Sbjct 960812 CGCCTGGTCTAACGACACC---CTCGGTCATCAGACTCCACTTTACGCACCCGCTTGG 960758 >seq2316 Length=6356476 Score = 102 bits (112), Expect = 8e-17 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 131903 CGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTA 131962 |||| | ||| ||||| || | |||| || || || |||||||||||| || ||| Sbjct 2659565 CGCAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGACAATGTA 2659506 Query 131963 CGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCT 132022 || |||||| | |||||| |||| |||| | | || |||||||| || ||||| Sbjct 2659505 CGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAACCTTTGCTGATCTGGGGGAATGCCC 2659446 Query 132023 TCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACC 132082 ||||| || |||||| ||| | | ||| | ||| || | | || || || | | Sbjct 2659445 TCTTTGTCTTGAATTTTCGCTTTTACATTTTCAATAGTGTCAGAGGCTTCAACCTCTAAC 2659386 Query 132083 GTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | |||||||| || || ||||||| ||| |||||||| Sbjct 2659385 GTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCAT 2659345 >seq3450 Length=502752 Score = 98.7 bits (108), Expect = 9e-16 Identities = 109/142 (77%), Gaps = 4/142 (3%) Strand=Plus/Plus Query 51732 GCCTCGACATTGCCCAAGTCGCCGACGTGGCGCATCGCCGCGTTCGGAGCGCCGTGGTCG 51791 ||||||| ||||| | |||||||| ||||||| | ||| | || |||||||| || Sbjct 192352 GCCTCGATGTTGCCGAGATCGCCGACATGGCGCACGGTGGCGGTGGGCGCGCCGTGCTC- 192410 Query 51792 CTGC--CGGTGGGGTTGAAGTGTTCGCCCGCCGACGTGCAGCCGTTGCTGGTGTCGCCGA 51849 |||| | |||| ||||||||| |||| || |||||||||||||| || |||| || | Sbjct 192411 CTGCTTCCCTGGG-TTGAAGTGTGCGCCGGCGGACGTGCAGCCGTTTGTGTTGTCACCAA 192469 Query 51850 ATTCGTGCACGTGGAATCCGTG 51871 | || ||||| ||||| || || Sbjct 192470 ACTCATGCACATGGAAACCATG 192491 >seq593 Length=2014934 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 131906 AAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGC 131965 || || | |||||| || | | || || |||||||| |||||||| | | || || Sbjct 755154 AAACGAAGAACCAAGTGAAGCGTCGATTCCTTTTGAATATTGTAGTC--TGAAAGTGTGC 755211 Query 131966 GA--ATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTT 132023 || |||||||||||| ||||| | | |||| ||||| || |||||||| || ||||| | Sbjct 755212 GACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCCT 755271 Query 132024 CTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCG 132083 | || || |||||| ||| | | || | || || | |||||||| || | | Sbjct 755272 CCTTGTCTTGAATTTTCGCTTTTACATTCTCAATTGTGTCTGATGGCTCCACCTCCAGTG 755331 Query 132084 TCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 | | || || || || || ||||| | ||||||||||| Sbjct 755332 TGATAGTCTTTCCTGTTAGCGTTTTAACAAAAATCTGCAT 755371 >seq1964 Length=1360 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 131915 ACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCG 131974 |||||||| | | ||||| || || |||||||||||| | ||||| ||| || Sbjct 256 ACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTACGACCATCCTCC 197 Query 131975 AGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTA 132034 | ||| || |||| | |||| ||||| || || |||||||| || ||||| || || Sbjct 196 AACTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGG 137 Query 132035 ATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTA 132094 || || || | | || | || || | || || ||||| | || | ||||| Sbjct 136 ATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGTTCAACTTCTAGGGTGATTGTTTTG 77 Query 132095 CCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||| || | ||| |||||||| Sbjct 76 CCAGTCAGAGTCTTGACGAAGATCTGCAT 48 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476588120102640