Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq2316 104 7e-19 seq1317 102 3e-18 seq348 102 3e-18 seq1983 100 9e-18 seq1649 98.7 3e-17 seq459 98.7 3e-17 seq359 98.7 3e-17 >seq2316 Length=6356476 Score = 104 bits (114), Expect = 7e-19 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 || || ||| |||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 3556728 ATCGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCA 3556669 Query 2826 ACCCCGGGCTTCAGC 2840 | |||||| ||| || Sbjct 3556668 ATCCCGGGTTTCGGC 3556654 >seq1317 Length=3684703 Score = 102 bits (112), Expect = 3e-18 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 2765 TATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 ||| || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 3571705 TATAGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 3571764 Query 2825 AACCCCGGGCTTCAGC 2840 | |||||| ||| || Sbjct 3571765 GATCCCGGGTTTCGGC 3571780 Score = 100 bits (110), Expect = 9e-18 Identities = 93/114 (82%), Gaps = 7/114 (6%) Strand=Plus/Minus Query 2731 AAAGCATGA-TACAATGACATCTTTGTACTGTGTTTATG---GCTGAAGTAGCTCAGTTG 2786 ||| || || |||||||| || ||| ||| | || || || ||| ||||||||||| Sbjct 3567911 AAATCACGACTACAATGAAAT--TTG-ACTATCTTCATTACAGCCGAAATAGCTCAGTTG 3567855 Query 2787 GGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACCCCGGGCTTCAGC 2840 ||||||| |||||||||||||||||||||||||||||| | |||||| ||| || Sbjct 3567854 GGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATCCCGGGTTTCGGC 3567801 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 3496703 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 3496644 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 3496643 CCGGGTTTCGGC 3496632 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 3567043 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 3567102 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 3567103 CCGGGTTTCGGC 3567114 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 3571358 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 3571299 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 3571298 CCGGGTTTCGGC 3571287 Score = 80.6 bits (88), Expect = 8e-12 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| | |||||||||||||||||||||||||||||| |||| |||||||||| | | Sbjct 3567619 GCCGAAATTGCTCAGTTGGGAGAGCATTAGACTGAAGATTTAAAACTCCCTGGTTCGATC 3567678 Query 2829 CCGGGCTTCAGC 2840 |||| ||| || Sbjct 3567679 GCGGGTTTCGGC 3567690 >seq348 Length=4065129 Score = 102 bits (112), Expect = 3e-18 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 2765 TATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTC 2824 ||| || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 3328967 TATAGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTC 3328908 Query 2825 AACCCCGGGCTTCAGC 2840 | |||||| ||| || Sbjct 3328907 GATCCCGGGTTTCGGC 3328892 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 2959227 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 2959168 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 2959167 CCGGGTTTCGGC 2959156 >seq1983 Length=1088655 Score = 100 bits (110), Expect = 9e-18 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 2766 ATGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCA 2825 || || ||| |||||||||||||||||| |||||||||||||||||||||||| |||||| Sbjct 498062 ATAGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCA 498121 Query 2826 ACCCCGGGCTTCAGC 2840 | |||||| ||| || Sbjct 498122 ATCCCGGGTTTCGGC 498136 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 491374 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 491315 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 491314 CCGGGTTTCGGC 491303 >seq1649 Length=6078729 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 3963256 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 3963197 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 3963196 CCGGGTTTCGGC 3963185 >seq459 Length=876551 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 303315 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 303256 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 303255 CCGGGTTTCGGC 303244 >seq359 Length=3483218 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||| ||||||| | Sbjct 560945 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCCGGTTCAATC 561004 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 561005 CCGGGTTTCGGC 561016 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15848928422730