Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq3650 358 6e-94 seq2316 109 5e-19 seq593 96.9 3e-15 seq3450 84.2 2e-11 >seq3650 Length=1334389 Score = 358 bits (396), Expect = 6e-94 Identities = 916/1364 (67%), Gaps = 53/1364 (4%) Strand=Plus/Minus Query 59786 AACTATGTAATTCGGACGGATGCACTTCGAGTCAGCCGGTCGATGTTGTCATTGCAGATA 59845 |||| || ||||| || |||||| | || ||| |||| || | || | || |||| Sbjct 961656 AACTCTGCAATTCTGATGGATGCTCCTCCAGTGAGCCTACTGAGATCATCGTAGCTGATA 961597 Query 59846 CCGACGGCTCTCATCTCGCTCCGTTATATTATGAATATCA-AGAACTGAACCAGCCCTTC 59904 | |||||| |||| | |||| || || | | || |||| |||| | | ||| Sbjct 961596 CTGACGGCAGTCATTTACCTCCCTTGATGTAC-ACTCTCGGAGAAAAGAACAAACTATTC 961538 Query 59905 GAAAGTCGAGTAGTGGATAAAGTCGTTGCCGCATATTTTGTCGAATGGGGTGTTTATCCT 59964 || || | |||| ||||| |||| ||||| || || ||||||||||| || || Sbjct 961537 AAACA--GACTTCTGGA-AAAGTTGTTGGAGCATACTTCGTAGAATGGGGTGTGTACCCG 961481 Query 59965 AGAAATTTTCCTGTAGATCGAGTGCCCACTCCTAATCTATCGCATATTCTATACGGATTT 60024 ||||| || || || ||||| || || | |||||| || | ||| | |||||||| || Sbjct 961480 AGAAAATTCCCAGTCGATCGTGTTCCAATTCCTAACCTGACTCATTTACTATACGGCTTC 961421 Query 60025 ATTCCGATATGCGGCGGCGACGGTATCAACGACAGTCTTAAAACC-ATAACCGGTAGTTT 60083 ||||| || ||||| || || || ||||||||||| ||||||| || || ||||| Sbjct 961420 ATTCCAATTTGCGGTGGAGATGGCATCAACGACAG-CTTAAAAGAGATCGAAGGCAGTTT 961362 Query 60084 CGAAGCGCTTCAGCGATCGTGTTCAGGTCGAGACGACTTTAAAGTATCAATTCACGATCC 60143 | |||| |||||| ||||||| || ||||| || || |||||||| ||||||||||| Sbjct 961361 CCAAGCTCTTCAGAGATCGTGCAGCGGCCGAGAAGATTTCAAAGTATCTATTCACGATCC 961302 Query 60144 ATGGGCCGCCGTCCAGAAACCCCAAAAACAAGTAACCGCTTGGAACGAACCATACAAAGG 60203 |||||||| | |||||||| || || | | | | ||||||||||| |||||||| Sbjct 961301 TTGGGCCGCTCTTCAGAAACCACAGAAGGGATTGTCTTCCTGGAACGAACCTTACAAAGG 961242 Query 60204 TAATTTCGGACAATTAATGGCAGCCAAACTGGCAAATCCCCACATCAAAGTGTTGCCCTC 60263 || || || || | ||| | ||||| || | || | | || | | || || Sbjct 961241 CAACTTTGGCCAGCTGATGTCTCTCAAACAAGCCAGGCCTGAACTTAAGATCCTACCTTC 961182 Query 60264 GATCGGAGGTTGGACTCTATCCGATCCGTTCTTTTACTTTCACGATACGGATAAACGAAA 60323 ||||| |||||||| ||| ||||||| ||||| | ||| ||| | ||| || || | Sbjct 961181 CATCGGTGGTTGGACACTAGCCGATCCCTTCTTCTTCTTCACCGACAAGGAGAA--GAGA 961124 Query 60324 GAT--TTTTGTAGATTCTGTCGTGGAGTTTCTACAGACGTGGAAATTTTTCGACGGTGTC 60381 ||| || || |||||||| || || || ||| ||||| || ||||| ||||| Sbjct 961123 GATCGCTTCGTTGATTCTGTAAAAGATTTCCTCTTGACCTGGAAGTTCTTCGATGGTGTT 961064 Query 60382 GACATCGACTGGGAGTTTCCCGGCGGAAAAGGTGCCAATCCCAACGTAGGCGACGCCGAA 60441 |||||||| ||||| || || || || || || || || ||| || | || | ||||| Sbjct 961063 GACATCGATTGGGAATTCCCTGGAGGTAAGGGAGCTAACCCCGACCTCGG-TAGCCCGAA 961005 Query 60442 CGCGATCGCGAAACGTACACCAT--TCTGTTGAAAGATTTACGCGAGGCGCTAGATCGAT 60499 | || || | || || | | |||| || || || || | | || || Sbjct 961004 AG---ACG-GAGATGTTTACGTTGAATTAATGAAGGAATTGCGTGAAATG-TTGAACG-- 960952 Query 60500 TAACCCTC-GAAACGAATCGAACG---TACGAGTTGACCAGCGCAATTAGCGCCGGCGAT 60555 | | || ||| || | | | |||||| ||||| ||| || || || || Sbjct 960951 -ACCTTTCTGAAGAGACCGGTAAGAAATACGAGCTGACCTCCGCTATCAGTGCTGGATGG 960893 Query 60556 GACAAAATCGCCGTCGTCGACTACACCGCTGCTCAAGAATATTTAGATTTAAtttttttG 60615 || || ||| || ||||| |||| | |||||| | ||| | || || || | Sbjct 960892 GATAAGATCCAAGTTGTCGATTACAGTGAAGCTCAAAAGTATATGGACCATATCTTCCTT 960833 Query 60616 ATGACGTACGATTTTAAAGGAGCCTGGTCGAATAACGATCTGGGCTATCAGACTACTCTA 60675 |||| || ||||||||||| |||||||| || || || || |||||||| | || Sbjct 960832 ATGAGTTATGATTTTAAAGGCGCCTGGTCTAACGACACCCTCGGTCATCAGACTCCACTT 960773 Query 60676 TACGCTCCTTCGTTTAATCCTAAAGAACATTATACTACCGATTTTGCCGTTCGTGCTCTA 60735 ||||| || | | || ||||| ||| |||||| || || |||| || ||| || Sbjct 960772 TACGCACCCGCTTGGAACCCTAAGGAAACTTATACCACTGACTTTG--GT--GTGAAATA 960717 Query 60736 CT--CAAGCAAAAAGTCGAGAA---TaaaaaaaTTATTGTCGGCGTGGCCATGTACGGTC 60790 | | || ||| || ||| ||| || ||| | || ||||| || |||||||| | Sbjct 960716 TTTGCTTGC-TCAAGGCGTGAACCCTAAGAAGATTGTGGTGGGCGTAGCTATGTACGGAC 960658 Query 60791 GCGGCTGGACCGGCGTAAGCGATTTTGTTGACGATAATAATCCATTTTCCGGAACGGCCA 60850 |||||||||| || || || | || || || |||||||| | || | || | Sbjct 960657 GCGGCTGGACTGGTGT---TCATAATTACGAAGACAACAATCCATTCACTGGCAACGCGA 960601 Query 60851 AGGGACCGGTCAAAGGAACATGGGAAGACGGAGTCGTCGACTATAGAGAGATTTTCAAT- 60909 ||||| |||||||| || ||| ||||||| || || |||||||||| || || Sbjct 960600 CTGGACCAGTCAAAGGTACTTGGCAAGACGGTGTAGTTGACTATAGAGCAATAGCACATG 960541 Query 60910 -AATTTCGTCGCCAATAACCCGAT-GGAAT---ATTACGATTCCGTTGCAAAAGCGGCGT 60964 ||| | | | ||| || ||||| |||||||| ||||| | || | | Sbjct 960540 AGATTGCTTTG--GGTAA----ATGGGAATTCCATTACGATAATGTTGCTGAGGCTCCTT 960487 Query 60965 ACGTCTTTAATAACTCGACCGGCGAGCTCATCACTTACGACAATCCTCGGTCGGTTCTGG 61024 |||| || | ||||| || || | || || || || ||| | || ||| | | | Sbjct 960486 ACGTGTTCAGGCCATCGACTGGTGACTTAATAACGTATGATAATGCACGATCGACTATTG 960427 Query 61025 ATAAAGCAAAATATGTATTGGACTAT-AGCTTGGGTGGTTTGTTCGCTTGGGAGATCGAC 61083 | |||| || ||||| | || ||||| |||||||| ||||| |||||||||||| Sbjct 960426 AGAAAGGCAAGTATGTTAGAAAAAATAAGCTT-GGTGGTTTATTCGCGTGGGAGATCGAC 960368 Query 61084 GCCGACAACGGATTACTTCTAAACGCCATGAACAGCGGTCTCGG 61127 || ||||| || ||| |||| |||||||||| ||||| || Sbjct 960367 GCAGACAATGGTGAACTATTAAATGCCATGAACATGGGTCTTGG 960324 >seq2316 Length=6356476 Score = 109 bits (120), Expect = 5e-19 Identities = 178/252 (71%), Gaps = 7/252 (3%) Strand=Plus/Plus Query 25160 TTTCAATTAAACAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATC 25219 || || || ||||| |||| | || |||||||| | || || ||| | || ||| | Sbjct 2659332 TTACAGTTCAACAA--TGCAGATCTTCGTAAAAACCCTCACGGGTAAAACCATAACGTTA 2659389 Query 25220 GAAGTCGAAGCCAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGT 25279 || || |||||| || ||||| || | |||||| |||||| || |||||||| Sbjct 2659390 GAGGTTGAAGCCTCTGACACTATTGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGGGC 2659449 Query 25280 ATACCGCCCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AA 25337 || || || ||||||||||| | || | || ||||||||| | ||||||| | | Sbjct 2659450 ATTCCCCCAGATCAGCAAAGGTTGATCTTCGCCGGCAAACAGTTAGAAGATGGACGTACA 2659509 Query 25338 ATGTCAGCGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAG 25397 |||| ||| ||||| || || || ||||| || |||| || ||||| || || ||| Sbjct 2659510 TTGTC--CGACTACAACATCCAGAAGGAATCAACACTTCACTTGGTGTTGAGGCTGCGAG 2659567 Query 25398 GAGGAAAATGAT 25409 |||| |||||| Sbjct 2659568 GAGG-TAATGAT 2659578 >seq593 Length=2014934 Score = 96.9 bits (106), Expect = 3e-15 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| |||| ||||| | ||||| | || || || |||| | Sbjct 755371 ATGCAGATTTTTGTTAAAACGCTAACAGGAAAGACTATCACACTGGAGGTGGA-GCCATC 755313 Query 25235 -GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 || || || ||| | |||||| |||||| || || ||||| || || || ||||| Sbjct 755312 AGACACAATTGAGAATGTAAAAGCGAAAATTCAAGACAAGGAGGGCATTCCCCCAGATCA 755253 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTAC 25351 |||| | || || | | || || || |||||||||| | | | | |||| | ||| Sbjct 755252 GCAACGTCTTATCTTTGCGGGTAAGCAGCTCGAAGATGGTCGCACACTTTCAG--ACTAC 755195 Query 25352 AATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||||||||||| ||||| || |||| || || | | || |||||||| Sbjct 755194 AATATTCAAAAGGAATCGACGCTTCACTTGGTTCTTCGTTTAAGAGGAGG 755145 >seq3450 Length=502752 Score = 84.2 bits (92), Expect = 2e-11 Identities = 106/142 (75%), Gaps = 4/142 (3%) Strand=Plus/Minus Query 105771 CACGGCTTTCATGTACACGAATTCGGCGACACGAGCAACGGTTGCACGTCTGCCGGCGAG 105830 || || || ||||| || || || || |||| | ||||| |||||||| ||||||| Sbjct 192491 CATGGTTTCCATGTGCATGAGTTTGGTGACAACACAAACGGCTGCACGTCCGCCGGCGCA 192432 Query 105831 CATTTCAACCCTACGG--GCATGGCTCACGGCGCGCCCAGCTCTGCCGTTCGTCACGTCG 105888 || |||||||| | || ||| || ||||||||||||| | | |||| || || |||| Sbjct 192431 CACTTCAACCC-AGGGAAGCA-GGAGCACGGCGCGCCCACCGCCACCGTGCGCCATGTCG 192374 Query 105889 GTGATCTTGGCAATATTGATGC 105910 | ||||| ||||| || || || Sbjct 192373 GCGATCTCGGCAACATCGAGGC 192352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445072846303680