Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq751 105 1e-16 seq2583 91.5 2e-12 >seq751 Length=1288 Score = 105 bits (116), Expect = 1e-16 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 || ||||| |||||||| || ||||| ||| || | | || |||| |||| || Sbjct 882 ATTTACAAAGTGCTCAAACAAGTGCATCCCGACACTGGT-----ATA-TCCAGCAAGGCC 829 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||||| || ||||||||||| |||| || || | | |||||| | Sbjct 828 ATGTCTATCATGAACTCTTTCGTCAACGACATCTTCGAGCGTATTGCGGCTGAGGCCTCT 769 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || || || | || ||||||||| || ||| || | ||| | ||||| ||||| Sbjct 768 CGTCTCGCTCACTACAACAAGCGATCAACCATCACATCGAGGGAGGTGCAGACATCCGTG 709 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 | ||| | ||| ||| ||| | |||| |||||| ||| || ||||| Sbjct 708 AGACTGCTACTGCCCGGTGAATTAGCCAAGCACGCAGTCAGTGAAGGCAC 659 >seq2583 Length=303979 Score = 91.5 bits (100), Expect = 2e-12 Identities = 147/208 (71%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 332849 ATTTGGGCGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCG 332908 || || ||||| ||||| ||| ||||||| | ||| || || ||| | || |||| Sbjct 81397 ATCTGTGCGTCGGTGAGCCGCGAGTAGCGCAGCACGGCGCAGCGAGACTGTATGGGCTCG 81456 Query 332909 ATGAC-CATTGACGACGT-GTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTT 332966 |||| | | || || |||| || || |||||||||||||| |||| | | || Sbjct 81457 ATGATGCGCT--CGCTGTTGTTGGCAGCGAGCGCAAACCGCGTCGTGTTGGCGTACAGTT 81514 Query 332967 CCATGGTCGACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGA 333026 ||||||| ||| || ||||| || ||| | ||| | || ||| |||||||| |||| Sbjct 81515 CCATGGTGCGCCGCAGCGCCTGCTGCGCCCCTTCCGTCATGCTGTCCGCCTCGTCCAGGA 81574 Query 333027 TGATGATCTTGTGGCGCCCGTGCGGCAG 333054 | | |||||||| |||||| ||||| Sbjct 81575 TCACTATCTTGTGCCGCCCGGCAGGCAG 81602 Score = 87.8 bits (96), Expect = 3e-11 Identities = 175/253 (69%), Gaps = 10/253 (4%) Strand=Plus/Plus Query 333089 TTGCGCACGACGTCCACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCG 333148 ||||| |||||||| | |||||| |||| |||||||| || |||||||| || ||| | Sbjct 81710 TTGCGTACGACGTCAATGCCGCGGTCGTTGGACGCGTTCAGCTCGAGCACAGCGTCGCGG 81769 Query 333149 GCGGCCGCACCCAAGAGGACGCGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCG 333208 || ||||| | || | || || ||||| ||| | || |||||||| || Sbjct 81770 AATGCTGCACCGAGCAGAGCTCGAGCTAGGCATAAGATCGTTGTCGTCTTGCCGACACCT 81829 Query 333209 GGCGGACCCGCCAGCAAGAGGTTGGGCATGTTGCC-GT-CG-GCGGCCAGCGCCTTGAGG 333265 || ||||| || | | || ||| ||| |||||| || || ||| || |||| | Sbjct 81830 GGAGGACCTGCGATTATGATGTTAGGCGCGTTGCCCGTGCGCGCGAACACCGCCAATCGC 81889 Query 333266 TAGGCAACGGCGTGCTCGTTGCCGACAATGTCGTCGAGCACCATT--GGGCGGTACTTTT 333323 | || | || |||||||||||||||||| || | | || || | |||||||| Sbjct 81890 GACACA---GTGTCCTCGTTGCCGACAATGTCTTCAA--AAGTTTGCGGCCTGTACTTTT 81944 Query 333324 CGATCCATGGGAG 333336 | |||||||| || Sbjct 81945 CTATCCATGGTAG 81957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177437545579588