Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq593 114 1e-20 seq2316 107 2e-18 seq359 96.9 3e-15 >seq593 Length=2014934 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 |||||||| ||||| || |||| ||| || || | || |||| ||| ||||| || || Sbjct 755637 TCCTTTTGGATGTTATAGTCGGACAATGTGCGTCCATCTTCCAACTGTTTACCGGCGAAG 755696 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | ||||||||||| | |||| || ||||||||| ||||||| ||| | | | Sbjct 755697 ATGAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTTGCCTTAACATTC 755756 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| | |||||||||| ||||| || || || ||||| || |||||| Sbjct 755757 TCAATTGTGTCTGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCTGTCAATGTCTTCACA 755816 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 755817 AAAATCTGCAT 755827 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 35528 ACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCC 35587 ||||| || | ||| ||||||||||| ||||| || | | || || | || || Sbjct 755163 ACCAAGTGAAGCGTCGATTCCTTTTGAATATTGTAGTCTGAAAGTGTGCGACCATCTTCG 755222 Query 35588 AGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATG 35647 ||||||||||||||||| || | || ||||| || | |||| || |||||||| | || Sbjct 755223 AGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCCTCCTTGT-CTTG 755281 Query 35648 ATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTT 35706 | ||| || || | | | | | ||||| | |||||||||| ||||| || || Sbjct 755282 AATTTTCGCTTTTACATTCTCAATTGTGTCTGATGGCTCCACCTCCAGTGTGATAGTCTT 755341 Query 35707 ACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || || | ||||| ||||| |||||||||| Sbjct 755342 TCCTGTTAGCGTTTTAACAAAAATCTGCATTC 755373 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || ||||||||||| | ||| || || | || || ||||| || || ||||| Sbjct 755409 TCTTTCTGGATGTTGTAATCTGACAATGTGCGTCCATCTTCAAGCTGTTTGCCAGCAAAG 755468 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||| | ||||||||| | |||| || || ||||| ||| || ||| | | || Sbjct 755469 ATCAATCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCTTGGATTTTAGCCTTAACATTT 755528 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| | || ||||| | ||||| || || || ||||| || || || Sbjct 755529 TCAATTGTGTCAGATGGCTCAACCTCTAATGTGATAGTCTTGCCTGTCAAGGTCTTAACG 755588 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 755589 AAGATCTGCAT 755599 >seq2316 Length=6356476 Score = 107 bits (118), Expect = 2e-18 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 35506 ATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATC 35565 ||| || || || | |||||||||||| || | || ||||| || |||||||| || Sbjct 2659575 ATTACCTCCTCGCAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTC 2659516 Query 35566 GGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGA 35625 || ||| || || | || || | ||| || || || || ||||||| ||||| || | Sbjct 2659515 GGACAATGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAACCTTTGCTGATCTGG 2659456 Query 35626 AGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGTTGCCACCGTGTCGCTCGATT 35684 |||| || ||| |||| | ||| ||| || || | | || | | ||||| | || Sbjct 2659455 GGGAATGCCCTCTTTGT-CTTGAATTTTCGCTTTTACATTTTCAATAGTGTCAGAGGCTT 2659397 Query 35685 CCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATT 35737 | ||||| | ||| || ||||||||||| | ||||| || || ||||||||| Sbjct 2659396 CAACCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCATT 2659344 >seq359 Length=3483218 Score = 96.9 bits (106), Expect = 3e-15 Identities = 91/116 (78%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 43152 GGAGTTGTGTATTGGATGTCGCGAGACAGCCGCATCGAAGACAACTGGGCCTTTCTATAC 43211 || ||||| |||||||||||| |||||||| | | ||||||||||||| ||||||| | Sbjct 2595793 GGTGTTGTTTATTGGATGTCGAGAGACAGCAGAGTTCAAGACAACTGGGCATTTCTATTC 2595852 Query 43212 GCCCAACAGATGGCCATCGAACACAAGGTGCCCTTGCACGTCTGCTTCTGTCTGGT 43267 || || || |||| | || || |||| || ||||| ||||| |||||| |||| Sbjct 2595853 GCGCAGAAGCTGGCTCTTAAAAACGAGGTTCCTTTGCATGTCTGTTTCTGTTTGGT 2595908 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450771770319920