Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2316 576 2e-159 seq348 111 2e-19 >seq2316 Length=6356476 Score = 576 bits (638), Expect = 2e-159 Identities = 1201/1772 (68%), Gaps = 30/1772 (2%) Strand=Plus/Plus Query 68374 GTAAACTGAATGGG-TGAGGATGCGGGTTTTGTACGTAGATAGTACATACCGGTTTTCAG 68432 || |||||||| | | || | || || ||| |||||| ||| ||||| || ||||||| Sbjct 2965206 GTGAACTGAATAGCATTAGCA-GCAGGCTTTATACGTAAATAATACATTCCTGTTTTCAA 2965264 Query 68433 ACCTAGACTCCATCCGTAGAAATGCATACTTGTTAGTTTGGAATAACTTGGATCGGCTAT 68492 ||| | ||||| |||| || || || ||| | ||| |||| | || || || | Sbjct 2965265 ACCCATTTTCCATGCGTAAAAGTGAATTGATGTCAATTTTCCATAATTCGGTTCAGCCAC 2965324 Query 68493 ATGAATATTCATCGATTGACTTTGATCGATGAAAGCTCCTCTATCTGCCGCCATTTTTAT 68552 |||||| || | ||||||||||| || || || || |||| ||| || |||||||| || Sbjct 2965325 ATGAATGTTAAAAGATTGACTTTGGTCTATAAATGCACCTCGATCAGCAGCCATTTTAAT 2965384 Query 68553 AATACTCTTTTGAGGAATTTCCCAAATAGTCTTAAAAATCTGTTTGATATCATCTGGAAG 68612 || | || || ||| ||||||| || ||| | | | | | || || | ||| | Sbjct 2965385 TGTAGTTTTAACAGAAATCTCCCAAACTGTTTTATACAATTCTCTAATGTCCTTTGGTAT 2965444 Query 68613 --GCTCG-TATTTTGAATGGATCCACCATCGGATATAATTATATTCTTGATCTCATCATT 68669 ||||| ||||||||||||| ||| | | || || | ||| || || || || | Sbjct 2965445 ACGCTCGATATTTTGAATGGAACCATTGTTGTGAATTATCAGATTTTTCATGTCGTCGTC 2965504 Query 68670 CCACAATTTTCTCTCCGTTAAAACTCTAAGGAGATGCGGATTAACTATTTGAAATTCCCC 68729 ||| || | | || ||| || ||| | | ||| | ||||| | || |||||||| Sbjct 2965505 CCATAAATCTGCCTGCGTCAAGTCTCGCAACAAATGATGGTTAACAACCTGGAATTCCCC 2965564 Query 68730 AGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTATTTCC 68789 ||| || || | | |||||| || ||| ||||||| | |||||||| ||||| Sbjct 2965565 AGACAAAACACGTCTTTGGTAAATGTTTGATGTAAATGGTTCAAAGGATTCATTGTTTCC 2965624 Query 68790 CAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTAAGACC 68849 || ||||| || || || || || ||||| || || | || | ||| | || || Sbjct 2965625 CAAGATTTGGGCTGTAGACGCTGTAGGCATTGGAGCTAATAAAAGCGAATTGCGCAGCCC 2965684 Query 68850 ATGTGTTATGATTTTATCTTTTAGATGTTTCCAATCCCAAAGATCAGATGGTACAACATT 68909 |||| | ||||| ||||||| | ||| ||||| ||||||||||| || Sbjct 2965685 ATGTTTGGCAATTTTTTCTTTTAAAACAGACCAGTCCCAGAGATCAGATGGAGTTTTATC 2965744 Query 68910 CCAAAGATCGTATTGTAGAATTCCGTTACTTGCATATGATCCATTATATGTTTCATAAGG 68969 ||| | || ||||| | ||| || | ||||| ||| | |||||| |||| Sbjct 2965745 CCACATGTCATATTGCAAAATGCCTTGGCTTGCTGGACTTCCTTCATATGTACTATAAAC 2965804 Query 68970 TCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAA 69029 |||||| || || ||||| ||||| || |||||||| |||||||| || |||||||| Sbjct 2965805 TCCTTCTCTTTGCGCCAGTTCGCAACTGGCTTCTAATGCTCCGTAATATATCGTTTCGAA 2965864 Query 69030 AATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAA 69089 || | | || || | ||| | ||| || | ||| | | |||| ||| Sbjct 2965865 GATTTGTTGGTTAAGTTTAATTGCCTTGTCACTTTCATAAGGAATGCGCATCAGAACAAA 2965924 Query 69090 TGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTCTCTTATTTGAACTTTC 69149 || ||| || || || || || ||||| || || ||||| || | | | || ||| | | Sbjct 2965925 TGTATCAGCTAACCCTTGCACTCCAATCCCAATTGGTCTGTGGCGCATGTTGGAATTCTT 2965984 Query 69150 AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTAAGATTTCGGACTACTAC 69209 |||||||| | || ||| |||||| ||| |||||||||||||| ||| | | || Sbjct 2965985 TGCTTCTGGCACTGGGTAAAAATTAACATCAATAATTTTATTAAGGTTTTGTGTGATTAT 2966044 Query 69210 TTTAACCACGTC-CTTTAGTTTGAGAAAATCAAATCGTCCATCTA---TAACAAACATAT 69265 || || || || | |||| ||| | || | |||| |||||||| | | Sbjct 2966045 CTTTGTGACTTCTCTCAACTTTGT-AAAGTTGTATGTTTTATCTTCATTAACAAACCTGT 2966103 Query 69266 TCAGTGCTACAGATGCTAGATTACAAACTGCTACCTCATTAGAATTTGCATATTGTATTA 69325 ||| || | ||| |||| ||||||||| || || |||| | | |||| | | Sbjct 2966104 TCAAAGCAATAGAAGCTAAATTACAAACAGCAACTTCATCTGCTGAAGTGTATTCAACAA 2966163 Query 69326 TCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTGT 69385 | ||||| || | |||||| ||||| || || || ||||||| ||||| || ||| ||| Sbjct 2966164 TTTCTGTGCACAAATTACTGCATTTAATGGTGCCAAGATTTTTTTGATTGCTTTTTCTGT 2966223 Query 69386 TACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATAG 69445 |||| | || || || | ||| | || || || ||||| | || | ||| || || | Sbjct 2966224 TACAAGAATCTTTATATAACATATATGGTGTGCCTGTTTCCACTTGTGCTTCTATGATTG 2966283 Query 69446 ATTTCCAAACGACCCTAGCATTTATTACGGTCTTG--TAACGCTTCTCTTTT-----TCA 69498 |||||| | | ||| ||| |||| |||| |||||||| ||| Sbjct 2966284 CTTTCCACAGTTCTTGAGCT-------CGGACTTGCTTAACAAATCTCTTTTCCTCTTCA 2966336 Query 69499 TATTGTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCA 69558 ||||| ||||| ||| ||||| ||||||||| || | | || || || ||| Sbjct 2966337 TATTGCCCATATAATGCTTCAAATTCTTCTCCCCAACAGTCGGCAAGACCGGGGCAATCA 2966396 Query 69559 TTTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGA 69618 | || ||||| || ||||| ||||| | | ||| || |||||||| | ||| || Sbjct 2966397 TGAGGGCACATTAAACTCCACATTTCATCTTTTTCAACACGCTTCATAAACAAATCTGGG 2966456 Query 69619 ATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGTAttttttttA 69678 ||||| | || ||| || ||||||| ||| |||||| || || ||||| ||||| Sbjct 2966457 ATCCATAATGCATAAAATAGTTCTCTGGCTCTGACTTCTTCTTTGCCAGTATTCTTTTTC 2966516 Query 69679 AGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCCC 69738 ||||| | |||||| | | |||||| ||||| ||||||| || || || | | || Sbjct 2966517 AGATCTAAAAACTCAAACACATCAGAGTGCCAGGGTTCTAAGTAAATAGCAAATGCACCT 2966576 Query 69739 GGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATC 69798 |||||||| || ||||| || || | || || || || ||||| || |||| || ||| Sbjct 2966577 GGTCGTTTGTTGCCTCCTTGGTCAACATACCTTGCTGTATTATTGTACACTCGCAACATT 2966636 Query 69799 GGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATA 69858 || | || |||||| ||| ||| || || || | |||||| | ||| |||| | |||| Sbjct 2966637 GGTACAAGACCATTGGATACACCGTTAGTACCTGCTATATAAGTACCTTTTGCTCTAATA 2966696 Query 69859 TTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAAT 69918 | || | ||| || || || || || ||| ||||||| ||||| |||| | | Sbjct 2966697 CAATGAACATGTAGTCCAATGCCACCAGCTGATTTTGAGATTAATGCACATTGTTTTAGT 2966756 Query 69919 GTGTCATATATACCCTCTATGCTATCATCTATCAT-GTTAAGAAGAAAACAGCTAGACAT 69977 |||||||||||||| || ||||| |||||| |||| | || | || || || ||||| Sbjct 2966757 GTGTCATATATACCTTCAATGCTGTCATCTTTCATAGCTATG-AGGAAGCAAGAAGACAA 2966815 Query 69978 TTGATGATGT-ATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTT 70036 ||| || | | |||| | ||| |||||||| ||| || || || || |||||| Sbjct 2966816 TTG-TGGTCTCGGAGTTGCTGCAGAGAATAATGTGGGACTGGCATGTGTAAAGTATTTTT 2966874 Query 70037 CAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTATC 70095 |||| | | ||||| |||||||| ||||| || || || ||| ||| ||||| || Sbjct 2966875 CAGACAATAAGTTGTAGGTTTCAATGGCTGAATCAATGTCTTCAC-CATGGATTCCAATT 2966933 Query 70096 GCGACACGCATCAACATATGCTGAGGTCGTTC 70127 | ||| ||||||| ||||||||| |||| ||| Sbjct 2966934 GAGACCCGCATCAGCATATGCTGGGGTCTTTC 2966965 Score = 96.9 bits (106), Expect = 5e-15 Identities = 103/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 70338 AAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTAGAATAGC 70397 |||| |||| || ||||| ||||||||||| ||||| |||| ||| || ||||| | ||| Sbjct 2967855 AAAT-GTTTCTTGGTTTCTTTGTGTAAATTAGATATAGCTAATCTAGCAGCTAGTACAGC 2967913 Query 70398 ATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTATCTAATTC 70457 || || ||||| | ||| || ||| || || |||| |||||||| | || ||||| Sbjct 2967914 GTAATCTGGATGATCTGTTGTCATAGTGGCAGCAGTTTCTGCAGCTAAATTGTCCAATTC 2967973 Query 70458 TATAGTTGTAACTCC 70472 | |||||| ||||| Sbjct 2967974 CACAGTTGTTACTCC 2967988 >seq348 Length=4065129 Score = 111 bits (122), Expect = 2e-19 Identities = 135/184 (73%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 39878 TCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCC 39937 ||| | | ||| |||||||| | || |||||| || || || | || || || || Sbjct 3297244 TCTCTGATATAAGTATCTATCAGCAATGAATACATCTCAGAGTGTACATTCTCCATAGCA 3297185 Query 39938 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCC 39997 || || ||||||||||| | ||||||||| |||||| || ||| |||||| || Sbjct 3297184 ATTTGGAATCCGTAAAAGAACCTTGCTTCACCAATTTGAACTTCTTGTGAAAATCGCTCT 3297125 Query 39998 GCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATA 40057 ||| ||||||||| || || ||||| || |||||||| ||||| |||||||| ||| Sbjct 3297124 ACCAGATTTTCATTAACAATACCATCGGAGGCAGCAAAAAACGCCAAGACATGTTTTATA 3297065 Query 40058 AAAT 40061 |||| Sbjct 3297064 AAAT 3297061 Score = 107 bits (118), Expect = 3e-18 Identities = 157/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||| ||| ||| | ||| || || || | || ||||| | |||||||| | Sbjct 3297633 CCTCATCCCTAGAAATCAGTTCATTGCTGAAGGTCAAACCGGGCATCAAGCCACGCTTCT 3297574 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | ||| ||||| | |||||| ||| |||||||||||||||||||| || ||||||| Sbjct 3297573 TCAACCAGAATATTGATGCAAAACTTCCGGAAAAGAAGATGCCTTCTACAGCCGCAAATG 3297514 Query 39759 CAACAAGTCTCTCTCCGTAACTTG-TATCATTATG--TATCCACTTCTGTGCCCAATCAG 39815 |||| | |||||||| | ||| | || | || ||||| | |||||| || | Sbjct 3297513 CAACTATCCTCTCTCCAAAGTTTGCTGTCTTGCTGGCGATCCATTGTAATGCCCAGTCTG 3297454 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 | || || || |||||||| | || || || ||||| || Sbjct 3297453 CCTTTTTTTTCACACAAGGTAAAGTCTCAATGGCATTGAA 3297414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686875536441360