Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq348 104 2e-17 >seq348 Length=4065129 Score = 104 bits (114), Expect = 2e-17 Identities = 125/170 (74%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 || ||||||||||||||||| ||| || || || ||||||||| |||| || ||| Sbjct 3297075 GTCTTGGCGTTTTTTGCTGCCTCCGATGGTATTGTTAATGAAAATCTGGTAGAGCGATTT 3297134 Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969 | |||||||||||| | |||||| | | ||||| || || |||||||| || || Sbjct 3297135 TCACAAGAAGTTCAAATTGGTGAAGCAAGGTTCTTTTACGGATTCCAAATTGCTATGGAG 3297194 Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 ||| | || || || ||||| | ||||||||||| || |||| ||| Sbjct 3297195 AATGTACACTCTGAGATGTATTCATTGCTGATAGATACTTATATCAGAGA 3297244 Score = 84.2 bits (92), Expect = 2e-11 Identities = 82/103 (80%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 43685 GAAAATCCGTCTAGGTTT-GTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTA 43743 |||||||| || |||| ||| | || || || ||||||| ||| || ||||||||||| Sbjct 3296827 GAAAATCC-TCGGCGTTTCGTCATCTTCCCCATCCAATATCCTGATATCTGGCAAATGTA 3296885 Query 43744 CAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGAT 43786 |||||| ||| | || ||||| ||||||| || ||||||||| Sbjct 3296886 CAAAAAGGCAGAAGCTTCATTCTGGACAGTGGAGGAAGTTGAT 3296928 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397437234363370