Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2316 266 3e-66 seq3650 208 6e-49 seq1964 102 7e-17 seq593 93.3 4e-14 seq3450 91.5 1e-13 >seq2316 Length=6356476 Score = 266 bits (294), Expect = 3e-66 Identities = 1102/1712 (64%), Gaps = 65/1712 (4%) Strand=Plus/Plus Query 130406 TTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCT 130465 || || || ||||| ||||| ||||| | || ||||| | || ||||||||||| ||| Sbjct 2965197 TTGTCAACCGTGAACTGAATAGCATTAGCAGCAGGCTTTATACGTAAATAATACATTCCT 2965256 Query 130466 GTTTTGAGTCCAATTTTGTGTCCATAATTGTGGAT-GCTGCACATTGTTTGGTAATTGGG 130524 ||||| | || ||||| | | ||| ||| || | || ||| || ||||| || Sbjct 2965257 GTTTTCAAACCCATTTTCCATGCGTAAAAGTGAATTGATGTCAATT-TTCCATAATTCGG 2965315 Query 130525 TTGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAGC 130584 || ||||| ||||| | ||||| ||| || ||||| || || | || ||||| Sbjct 2965316 TTCAGCCACATGAATGTTAAAAGATTGACTTTGGTCTATAAATGCACCTCGATCAGCAGC 2965375 Query 130585 CATGTCGAGCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATGTG 130644 ||| | | | |||||| ||||||||| | || || || | || ||||||| Sbjct 2965376 CATTTTAATTGTAGTTTTAACAGAAATCTCCCAAACTGTTTTATACAATTCTCTAATGTC 2965435 Query 130645 TTTGGGTATGCGCGCAATCGATTGAACGCTACCGTTGTTGGCTATAATTTCGTTGCGCAT 130704 || ||||| ||| | || ||||| | ||| |||||| || || || ||| Sbjct 2965436 CTTTGGTATACGCTCGATATTTTGAATGGAACCATTGTTGTGAATTATCAGATTTTTCAT 2965495 Query 130705 ACTTTTATCGTACAATCCAAGCTGTA-----CAAGATCTTTTACCAAATGATTATTAATG 130759 | |||| | || || ||| |||| ||| | |||||||| |||| Sbjct 2965496 G---TCGTCGTCCCATA-AATCTGCCTGCGTCAAG-TCTCGCAACAAATGATGGTTAACA 2965550 Query 130760 ATTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAG 130819 | || || || |||| || || ||||| ||||||||| || || ||||||||| Sbjct 2965551 ACCTGGAATTCCCCAGACAAAACACGTCTTTGGTAAATGTTTGATGTAAATGGTTCAAAG 2965610 Query 130820 GATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGA 130879 ||||| ||||| || || ||||| ||||||| || || ||||| || | ||| || Sbjct 2965611 GATTCATTGTTTCCCAAGATTTGGGCTGTAGACGCTGTAGGCATTGGAGCTAATAAAAGC 2965670 Query 130880 GAATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAG-A 130938 ||||| || || || || | | |||||| || || || ||| ||||| ||| | Sbjct 2965671 GAATTGCGCAGCCCATGTTTGGCAATTTTTTCTTTTAAAACAGACCAGTCCCAGAGATCA 2965730 Query 130939 GGTAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGA 130998 | | | || || | |||||| ||| |||| | ||||||| || || ||||| Sbjct 2965731 GATGGAGTT----TTATCCCACATGTCATATTGCAAAATGCCTTGGCTTGCTGGACTTCC 2965786 Query 130999 TTCGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCC 131058 ||| | | || | |||||| | ||||| ||| || ||||| || ||||| Sbjct 2965787 TTCATATGTACTATAAACTCCTTCTCTTTGCGCCAGTTCGCAACTGGCTTCTAATGCTCC 2965846 Query 131059 GTAATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGG 131118 |||||| || |||||| ||||||| || | || | || | || || || ||||| Sbjct 2965847 GTAATATATCGTTTCGAAGATTTGTTGGTTAAGTTTAATTGCCTTGTCACTTTCATAAGG 2965906 Query 131119 AAATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATG 131178 || ||| | || ||| | || || | || || | |||| || | ||||| || Sbjct 2965907 AATGCGCATCAGAACAAATGTATCAGCTAACCCTTGCACTCCAATCCCAATTGGTCTGTG 2965966 Query 131179 -----TTTTAAATTACATT--TACGCGAACATTCGGTGGGATAAAGGTTAATGTCAATTA 131231 | || | | | || | | | || |||| |||| |||| ||||| | Sbjct 2965967 GCGCATGTTGGAATTCTTTGCTTCTGGCAC------TGGG-TAAAAATTAACATCAATAA 2966019 Query 131232 TTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAA-TTTGTCGAAATCAAAC 131290 |||| || | || | | || | |||||| | |||| ||||| || | | Sbjct 2966020 TTTTATTAAGGTTTTGTGTGATTATCTTTGTGACTTCTCTCAACTTTGTA-AAGTTGTAT 2966078 Query 131291 GTGCCAGTTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCC 131350 || | ||| || ||||| || | | || || || | ||||||||| || Sbjct 2966079 GTTTTATCTTCA---TTAACAAACCTGTTCAAAGCAATAGAAGCTAAATTACAAACAGCA 2966135 Query 131351 GTTTCGTCATAATCGCAAT--ACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGG 131408 ||| || | | | | | | | ||||||||| | |||||||||||||| || |||| Sbjct 2966136 ACTTCATC-TGCT-GAAGTGTATTCAACAATTTCTGTGCACAAATTACTGCATTTAATGG 2966193 Query 131409 TGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATGG-TCCTTGTACATCATGTAGGGC 131467 |||| | ||||| |||||||||||| || ||| | || || || | ||| || || Sbjct 2966194 TGCCAAGATTTTTTTGATTGCTTTTTCTGTT-ACAAGAATCTTTATATAACATATATGGT 2966252 Query 131468 GTGCCCGTTTCGACTTGAGTTTCAATAATGTATCGAAAGAGTTTTCGAGCAGACAATTGA 131527 ||||| ||||| ||||| | ||| || || | | |||| | |||| | ||| Sbjct 2966253 GTGCCTGTTTCCACTTGTGCTTCTATGATTGCTTTCCACAGTTCTTGAGCTCGGACTTGC 2966312 Query 131528 T----ATTTGTATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCC 131583 | | | | || || | ||| || | | || || | |||||| | || || Sbjct 2966313 TTAACAAATCTCTTTTCCTC----TTCATATTGCCCATATAATGCTTCAAATTCTTCTCC 2966368 Query 131584 AAACGAACTGTC--CAA-ATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTT 131640 | ||| ||| ||| | ||| || || || ||||||| ||||| | | Sbjct 2966369 ---CCAACAGTCGGCAAGACCGGGGCAATCATGAGGGCACATTAAACTCCACATTTCATC 2966425 Query 131641 CTGTTCAACTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGC 131700 | |||||| ||||||||||||||||| || | |||||| || || || || ||||| || Sbjct 2966426 TTTTTCAACACGCTTCATAAACAAATCTGGGATCCATAATGCATAAAATAGTTCTCTGGC 2966485 Query 131701 TTTTTTCTCTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATG 131760 | | |||||| | || || | ||||||| || |||||| || || | || | || Sbjct 2966486 TCTGACTTCTTCTTTGCCAGTATTCTTTTTCAGATCTAAAAACTCAAACACATCAGAGTG 2966545 Query 131761 CCAGGGTTCCAAATACACTGCCATTGCGCCTTTGCG---CTTACCGCCTTGATTAACATG 131817 ||||||||| || || | || | ||| ||| || || || ||||| | ||||| Sbjct 2966546 CCAGGGTTCTAAGTAAATAGCAAATGCACCTGGTCGTTTGTTGCCTCCTTGGTCAACATA 2966605 Query 131818 ACGAACCATGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGT 131877 | | | || ||||| || |||||||| || | | ||| |||| || || || Sbjct 2966606 CCTTGCTGTATTATTGTACACTCGCAACATTGGTACAAGACCATTGGATACACCGTTAGT 2966665 Query 131878 GCTCTTAATGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCC 131937 | || || | || || ||||| || ||||| | |||||||| || || | Sbjct 2966666 ACCTGCTATATAAGTACCTTTTGCTCTAATACAATGAACATGTAGTCCAATGCCACCAGC 2966725 Query 131938 GTATTTAGAGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGC 131997 |||| ||||||| ||| |||| |||| |||| ||| |||||||| | |||||| | Sbjct 2966726 TGATTTTGAGATTAATGCACATTGTTTTAGTGTGTCATATATACCTTCAATGCTGTCATC 2966785 Query 131998 GGCAATGTCGACTAAAAAGCAAGAGGACAACTGTTGGT---GAAATGTGCCGGCTGAAAA 132054 || | | | |||||||| ||||| || |||| | | || | || || || Sbjct 2966786 TTTCATAGCTATGAGGAAGCAAGAAGACAATTG-TGGTCTCGGA--GTTGCTGCAGAGAA 2966842 Query 132055 CAATGTGGGGCTGGCGTGTGTAAAAAGTTTTT 132086 |||||||| ||||| |||||||| ||||| Sbjct 2966843 TAATGTGGGACTGGCATGTGTAAAGTATTTTT 2966874 >seq3650 Length=1334389 Score = 208 bits (230), Expect = 6e-49 Identities = 644/986 (65%), Gaps = 24/986 (2%) Strand=Plus/Plus Query 49565 TTGC-CTGTAATCCACTACGCCGTCCTCCCAAGTGCCCACGACAGGACCACCGGCAACGC 49623 |||| || || || ||||| ||||| | |||||| || ||| || ||| || || Sbjct 960550 TTGCTCTATAGTCAACTACACCGTCTTGCCAAGTACCTTTGACTGGTCCAGTCGCGTTGC 960609 Query 49624 CTGTGAACGGGTTGTCATCTGTGTAATCGTCGACTGCGGTCCAACCGCGGCCGTACATTG 49683 | ||||| || |||| ||| ||||| | || | ||||| ||||| |||||||| | Sbjct 960610 CAGTGAATGGATTGTTGTCTTCGTAATTATGAACACCAGTCCAGCCGCGTCCGTACATAG 960669 Query 49684 CCACTCCGATGACAATTTTTTCGCTAGC---CACGTTCTGTTTGAGCAGCTCGCGAACAG 49740 | || || | ||||| || | ||| |||| || |||| | ||| Sbjct 960670 CTACGCCCACCACAATCTTCT---TAGGGTTCACGCCTTGAGCAAGCAAATATTTCACAC 960726 Query 49741 CGGTGTCAGTGGTGTACAGTTCGCCGGCGTTCCACAGCGGC-GCATACAAATTG-GTTTG 49798 | ||||||||| || ||| | |||||| ||||| || || || | | || || Sbjct 960727 CAAAGTCAGTGGTATAAGTTTCCTTAGGGTTCCA-AGCGGGTGCGTA-AAGTGGAGTCTG 960784 Query 49799 GTAACCTAAATCGACATTGGACCAAGCACCTTTAAAATCGTACGACATTAGAAAAATTTG 49858 | ||| | | | || ||||| || ||||||||||| || ||| || || || || Sbjct 960785 ATGACCGAGGGTGTCGTTAGACCAGGCGCCTTTAAAATCATAACTCATAAGGAAGATATG 960844 Query 49859 ATCTAAATATTGCTGGGCGCTAGCATAGTCGACCAACTCGATTTTGTCATAGCCGGCGCC 49918 || | ||| | || || | || ||||| | | ||| || || | || || | Sbjct 960845 GTCCATATACTTTTGAGCTTCACTGTAATCGACAACTTGGATCTTATCCCATCCAGCACT 960904 Query 49919 AATAGCTGAAGTCAAAAGCAGTTTACGACCGGTCTGCTCTTGCACTTCGTCTAACATTTT 49978 ||||| || |||| ||| |||||||| || | |||| ||||||| Sbjct 960905 GATAGCGGAGGTCAGCTCGTATTTCTTACCGGTCTCTTCAGAAAGGTCGTTCAACATTTC 960964 Query 49979 GCGCAACTCTTTAAGCAAAATCACGTACGTGGCACCGTCATTGTCAACATCTCCCAAAAT 50038 ||||| || || | || ||||| | ||||| || || || | | Sbjct 960965 ACGCAATTCCTTCATTAATTCAACGTAAACATCTCCGTCTTTCGGG----CTACCGAGGT 961020 Query 50039 CGGG-TTGGCGCCTTTGCCGCCCGGAAACTCCCAGTCAATGTCGACGCCGTCGAAAAATT 50097 |||| || || || || || || || || ||||| || ||||| || || ||||| || | Sbjct 961021 CGGGGTTAGCTCCCTTACCTCCAGGGAATTCCCAATCGATGTCAACACCATCGAAGAACT 961080 Query 50098 TCCAAACTTGTAAA----AATTCGCGAACCGACTCCACAAACACTTTTCTGATCGCGTCA 50153 |||| || || || || || || || || || | ||| || | | Sbjct 961081 TCCAG----GTCAAGAGGAAATCTTTTACAGAATCAACGAAGCGATCTCTCTTCTCCTTG 961136 Query 50154 TCGTGCATGAAAAAGAATGGATCCGACAGAGTCCAACCGCCGATCGAAGGCAAAATTTTA 50213 ||| | ||| ||||| ||||| | || |||||||| ||||| ||||| | || ||| Sbjct 961137 TCGGTGAAGAAGAAGAAGGGATCGGCTAGTGTCCAACCACCGATGGAAGGTAGGATCTTA 961196 Query 50214 ATGTGCGGATGCGCCTTTTTGACGGCCATTAACTGACCAAAATTGCCTTTATACGGTTCG 50273 | | || || | ||||| | ||| | ||| ||||| |||||||| || |||||| Sbjct 961197 AGTTCAGGCCTGGCTTGTTTGAGAGACATCAGCTGGCCAAAGTTGCCTTTGTAAGGTTCG 961256 Query 50274 TTCCACGCGGACACTCCTTTTTGCGGCTTCTGTATGGCGGCCCAAGGGTCGTGTATGGAC 50333 ||||| | |||| ||| || || || ||||| | ||||||||||| ||||| || || Sbjct 961257 TTCCAGGAAGACAATCCCTTCTGTGGTTTCTGAAGAGCGGCCCAAGGATCGTGAATAGAT 961316 Query 50334 ACTTTAAAATCTTCCCGTCCCGCACACGATCGCTGCAACGCCTCGAAACTGCCGGTGATG 50393 ||||| |||||||| || || ||||||| ||| | || | ||||||||| ||| Sbjct 961317 ACTTTGAAATCTTCTCGGCCGCTGCACGATCTCTGAAGAGCTTGGAAACTGCCTTCGATC 961376 Query 50394 GTTTTGAGGCTGTCGTTGATACCGTCGCCGCCGCAAATGGGAATGAAACCGTACAACAGA 50453 ||| | |||||||||||| || || || |||||||| |||||||| ||||| | | | Sbjct 961377 TCTTTTAAGCTGTCGTTGATGCCATCTCCACCGCAAATTGGAATGAAGCCGTATAGTAAA 961436 Query 50454 TGAGTTAAATTTGGCACAGGCACTTTGTCCGCTGGAAAGTTGCGACCGTATACTCCCCAC 50513 ||||| | || || | || || || |||| || || | ||| || ||||| Sbjct 961437 TGAGTCAGGTTAGGAATTGGAACACGATCGACTGGGAATTTTCTCGGGTACACACCCCAT 961496 Query 50514 TCAACAAAGTATGCCGCCACGACTTT 50539 || || |||||||| | || ||||| Sbjct 961497 TCTACGAAGTATGCTCCAACAACTTT 961522 >seq1964 Length=1360 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||| | || | |||||||| | ||||| || || || || ||||||||| Sbjct 275 GCCGCCGCGGAGACGAAGCACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 216 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | || | || || | ||| || ||||| | |||||||| || || || || || Sbjct 215 GAGTGTACGACCATCCTCCAACTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGAGG 156 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||| || || || ||||||| || | | || | ||||| | || |||||| Sbjct 155 GATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGTTCAAC 96 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||||| || || | |||||| |||||||| || || ||||| |||||| Sbjct 95 TTCTAGGGTGATTGTTTTGCCAGTCAGAGTCTTGACGAAGATCTGCATA 47 >seq593 Length=2014934 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | || || | ||||| || | ||| || || ||||||||||||||||| Sbjct 755143 TGCCTCCTCTTAAACGAAGAACCAAGTGAAGCGTCGATTCCTTTTGAATATTGTAGTCTG 755202 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | |||| | ||||||||||| ||||| || | || ||||| || ||||| || | Sbjct 755203 AAAGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGG 755262 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCA 27197 | | ||||| || || || || ||| | | || | ||||||| |||| || Sbjct 755263 GAATGCCCTCCTTGTCTTGAATTTTCGCTTTTACATTCTCAATTGTGTCTGATGGC-TCC 755321 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || |||| || || || || ||||| ||||| || ||||| Sbjct 755322 ACCTCCAGTGTGATAGTCTTTCCTGTTAGCGTTTTAACAAAAATCTGCAT 755371 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 27038 TACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTC 27097 ||| ||||| | || || || ||||| || || |||||| || |||| | ||||| Sbjct 755618 TACTAAATGCAGGGTGGATTCCTTTTGGATGTTATAGTCGGACAATGTGCGTCCATCTTC 755677 Query 27098 GAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGC 27157 | ||||||||||||| | ||||||||||| || || || || | ||||| || || Sbjct 755678 CAACTGTTTACCGGCGAAGATGAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTG 755737 Query 27158 GATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-TGGCTTCAACTTCTAGAGTTATAGATT 27216 |||||| || | | || | ||||||| |||| || || | || || || | | Sbjct 755738 GATCTTTGCCTTAACATTCTCAATTGTGTCTGAAGGCTCCACCTCCAAG-GTGATGGTCT 755796 Query 27217 TGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 |||| |||| || |||||||| || ||||| Sbjct 755797 TGCCTGTCAATGTCTTCACAAAAATCTGCAT 755827 >seq3450 Length=502752 Score = 91.5 bits (100), Expect = 1e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 96893 ACACGGGTTTCATGTACACGAGTTTGGCGACACGAGCAACGGCTGCACTTCGGCCGGCGA 96952 ||| || || ||||| || |||||||| |||| | ||||||||||| || ||||||| Sbjct 192492 ACATGGTTTCCATGTGCATGAGTTTGGTGACAACACAAACGGCTGCACGTCCGCCGGCGC 192433 Query 96953 ACATTTCAACCCTACATTGCAAAATCACGGCGCACCCAGCGCCATTGAACGCCACGTTGG 97012 ||| |||||||| ||| | |||||||| |||| ||||| | ||||| || || Sbjct 192432 ACACTTCAACCCAGGGAAGCAGGAGCACGGCGCGCCCACCGCCACCGTGCGCCATGTCGG 192373 Query 97013 TGATCTGGGCAAC 97025 ||||| |||||| Sbjct 192372 CGATCTCGGCAAC 192360 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424914336987888