Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq2316 111 2e-19 >seq2316 Length=6356476 Score = 111 bits (122), Expect = 2e-19 Identities = 471/727 (65%), Gaps = 33/727 (5%) Strand=Plus/Plus Query 110706 GGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGG 110765 |||| ||||||| ||| ||||||||||| ||||||| || ||||||||||| || || | Sbjct 2965582 GGTAAATGTTTGATGTAAATGGTTCAAAGGATTCATTGTTTCCCAAGATTTGGGCTGTAG 2965641 Query 110766 AGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTG---ATGC 110822 | ||||| |||||||| || | ||||| || || || ||| | | ||| || Sbjct 2965642 ACGCTGTAGGCATTGGAGCTAATAAAAGCGAATTGCGCAG-CCCATGT--TTGGCAATTT 2965698 Query 110823 GTTCCTTGAGAACATCCCAGT--CGTAGTTGAGCTTG-GTTTCACCTTCCCACATGTCAA 110879 ||| || | |||| ||||| | || | || | | |||| | |||||||||||| Sbjct 2965699 TTTCTTTTAAAACAGACCAGTCCCAGAGATCAGATGGAGTTTTA---TCCCACATGTCAT 2965755 Query 110880 ACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTT 110939 | || | | |||||| || ||| || ||| | || ||| |||| || Sbjct 2965756 ATTGCAAAATGCCTTGGCTTGCTGGACTTCCTTCATATGTACTATAAACTCCTTCTCTTT 2965815 Query 110940 CAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCAT 110999 |||| ||| || || || || | | | ||| ||| || ||||| ||||| | | Sbjct 2965816 GCGCCAGTTCGCAACTGGCTTCTAATGCTCCGTAATATATCGTTTCGAAGATTTGTTGGT 2965875 Query 111000 TCA-TCTCCTTGGCT--TCATCTGAATCA--AATGCGTAGCGGCACAAAATAAATACATC 111054 | | | | ||| || ||| | || | |||||| | || || |||| ||| Sbjct 2965876 TAAGTTTAATTGCCTTGTCACTTTCATAAGGAATGCGCA-----TCAGAACAAATGTATC 2965930 Query 111055 CGCGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGT 111114 || | ||||| || || | ||||| |||||||| ||||| || || || || | Sbjct 2965931 AGCTAACCCTTGCACTCCAATCCCAATTGGTCTGTGGCGCATGTTGGAATTCTTTGC-TT 2965989 Query 111115 CT-CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTG 111173 || || || |||||||| ||||| | | || || |||| || | ||||||| Sbjct 2965990 CTGGCACTGGGTAAAAATTAACATCAATAATTTTATTAAGGTTTTGTGTGATTATCTTTG 2966049 Query 111174 TGATTTC-ATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGA 111232 ||| ||| | || ||| | | | | | || | |||||||| ||| || | Sbjct 2966050 TGACTTCTCTCAACTTTGT-AAAGTTGTATGT---TTTATCTTCATTAACAAACCTGTTC 2966105 Query 111233 AGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATC--CTTATCTGTGTACTCTAAAA 111290 | || || || || ||||| |||||||| ||||| || | ||||| || | || Sbjct 2966106 AAAGCAATAGAAGCTAAATTACAAACAGCAACTTCATCTGCTGA--AGTGTATTCAACAA 2966163 Query 111291 TTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGT 111350 ||||||| || || || | ||||| || || | ||| ||||| || || || ||| Sbjct 2966164 TTTCTGTGCACAAATTACTGCATTTAATGGTGCCAAGATTTTTTTGATTGCTTTTTCTGT 2966223 Query 111351 TGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAG 111410 | || | ||| || || | ||| || || || || || ||| |||| || | || | Sbjct 2966224 TACAAGAATCTTTATATAACATATATGGTGTGCCTGTTTCCACTTGTGCTTCTATGATTG 2966283 Query 111411 CCTTCCA 111417 | ||||| Sbjct 2966284 CTTTCCA 2966290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628001587550400