Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq3650 250 2e-61 seq593 140 3e-28 seq2316 122 8e-23 >seq3650 Length=1334389 Score = 250 bits (276), Expect = 2e-61 Identities = 791/1213 (65%), Gaps = 26/1213 (2%) Strand=Plus/Plus Query 53361 TCCTAAACCCTTGTGTATCGCATTCAAAAGATCTCCGTTGTCCGCGTCGATTTCCCACGC 53420 ||| | |||| ||| || ||||| || || || || ||||| |||||||| |||||||| Sbjct 960323 TCCAAGACCCATGTTCATGGCATTTAATAGTTCACCATTGTCTGCGTCGATCTCCCACGC 960382 Query 53421 AAACAATCCACCGAGATCGTTTTCAATCACATACTGGCCCTTGTC--TAGCACGGAATCG 53478 || || ||||| || | |||| | ||||||| ||| || || ||| || |||| Sbjct 960383 GAATAAACCACCAAGCTTATTTTTTCTAACATACTTGCCTTTCTCAATAGT-CG--ATCG 960439 Query 53479 ATGC--TGTCGTAACTGATTAAATCGCCAGAGTTTTTATTGAATACAAACGCTGCTTTGG 53536 ||| | || || | ||||| || |||| | |||| || | | || | | Sbjct 960440 -TGCATTATCATACGTTATTAAGTCACCAGTCGATGGCCTGAACACGTAAGGAGCCTCAG 960498 Query 53537 CTGTAGTGTCGTAAGTGTAATCGTATTGATGGC---CAATTTTTTCGTCAATTTTTCGGT 53593 | | | |||||| | | || ||| | |||| | | | ||| || | Sbjct 960499 CAACATTATCGTAATGGAATTCCCATTTACCCAAAGCAATCTCATGTGCTATTGCTCTAT 960558 Query 53594 AATCAACGACTCCGTCTTCCCATGTGCCTGTAACAGGGCCAGTTGCCACACCGGTGAACG 53653 | ||||| || ||||||| ||| || ||| | || || ||||| || || ||||| | Sbjct 960559 AGTCAACTACACCGTCTTGCCAAGTACCTTTGACTGGTCCAGTCGCGTTGCCAGTGAATG 960618 Query 53654 GATTGTCATCGCGGTAGCCGCTCACTCCAGTCCAACCGCGCCCGTACATCGCCACTCCGA 53713 |||||| || ||| || |||||||| ||||| |||||||| || || || | Sbjct 960619 GATTGTTGTCTTCGTAATTATGAACACCAGTCCAGCCGCGTCCGTACATAGCTACGCCCA 960678 Query 53714 GAACAATTTTTTCCTGTTGAACTTTTTGTTCGAGCAACGCGCGCACGGCAACATCGGCCG 53773 ||||| || | | | || ||| | ||||| ||| ||| || | | Sbjct 960679 CCACAATCTTCTTAGGGTTCACGCCTTGAGCAAGCAAATATTTCACACCAAAGTCAGTGG 960738 Query 53774 TGTAATGCTCGCTGGGAGACCAAACCGGCGCGTAAATCGCCGTTTGATGTCCCAAATCGG 53833 | ||| || | || |||| | || ||||||| | || ||||| || | | Sbjct 960739 TATAAGTTTCCTTAGGGTTCCAAGCGGGTGCGTAAAGTGGAGTCTGATGACCGAGGGTGT 960798 Query 53834 TGTTTGACCAAGCGCCTTTAAAATCATACGACATTaaaaaaaTTCTGTCCAGGTATTGTT 53893 ||| ||||| ||||||||||||||||| ||| | || || ||||| || | || Sbjct 960799 CGTTAGACCAGGCGCCTTTAAAATCATAACTCATAAGGAAGATATGGTCCATATACTTTT 960858 Query 53894 GGGCGTCGCGATAGTTGACGACCGCAATTTTATCATTGCCTGCACTGATTGCGCTAGTCA 53953 | || || | || | ||| || || ||||| || |||||||| ||| |||| Sbjct 960859 GAGCTTCACTGTAATCGACAACTTGGATCTTATCCCATCCAGCACTGATAGCGGAGGTCA 960918 Query 53954 ACTCGAACTTTCGT-CCAGTTTCCAATTCCAATTGATC---CAACATTTGTCGCAACTCT 54009 |||| | |||| | || || || ||| | | || |||||||| ||||| || Sbjct 960919 GCTCGTA-TTTCTTACCGGTCTC---TTCAGAAAGGTCGTTCAACATTTCACGCAATTCC 960974 Query 54010 TTTAACAACACCACATACGTTAAACTATC--TTTTTGAGGATCGCCCACGGACGGATTGG 54067 || | || | || || || | || | ||| || | || | | || || | Sbjct 960975 TTCATTAATTCAACGTA----AACATCTCCGTCTTTCGGGCTA-CCGAGGTCGGGGTTAG 961029 Query 54068 CACCGTTTCCGCCAGGAAACTCCCAATCGACGTCGACACCATCAAAAAATTTCCACGTCA 54127 | || || || ||||| || |||||||||| ||| |||||||| || || ||||| |||| Sbjct 961030 CTCCCTTACCTCCAGGGAATTCCCAATCGATGTCAACACCATCGAAGAACTTCCAGGTCA 961089 Query 54128 ATAGGAATTCGCGCACGGAATCCACAAACACTTTGCGTTTGGAAGAATCGTGGAAATGGT 54187 | ||||| || || ||||| || || | | || ||| ||| | Sbjct 961090 AGAGGAAATCTTTTACAGAATCAACGAAGCGATCTCTCTTCTCCTTGTCGGTGAAGAAGA 961149 Query 54188 AAAACGGATCCGATAACGTCCAACCGCCGATTGACGGTAATACTTTGACGTTGGGATTCG 54247 | || ||||| | || |||||||| ||||| || |||| | || | | || | | Sbjct 961150 AGAAGGGATCGGCTAGTGTCCAACCACCGATGGAAGGTAGGATCTTAAGTTCAGGCCTGG 961209 Query 54248 CTTTTTTCACGGCCATAATCTGTCCAAAATTGCCTTTATACGGTTCGTTCCAGGCGGAGA 54307 ||| ||| | | ||| | ||| ||||| |||||||| || ||||||||||||| || | Sbjct 961210 CTTGTTTGAGAGACATCAGCTGGCCAAAGTTGCCTTTGTAAGGTTCGTTCCAGGAAGACA 961269 Query 54308 CGCCTTTTTGCGGTTTTTGCACCGCCGCCCAAGGATCATGGATGGCTACTTTAAAATCCG 54367 || || || ||||| || | || ||||||||||| || || | |||||| ||||| Sbjct 961270 ATCCCTTCTGTGGTTTCTGAAGAGCGGCCCAAGGATCGTGAATAGATACTTTGAAATCTT 961329 Query 54368 ACCGGCCAGCGCAAGATCTTTGTAGAGCTTCAAAACTGCCCGGTATAGTTTTTAAACTGT 54427 ||||| ||| ||||| || ||||||| |||||||| || |||||| |||| Sbjct 961330 CTCGGCCGCTGCACGATCTCTGAAGAGCTTGGAAACTGCCTTCGATCTCTTTTAAGCTGT 961389 Query 54428 CATTTATTCCGTCGCCGCCGCAAATTGGCACAAAACCGTACAAAAGATGCGTCAAATTAG 54487 | || || || || || ||||||||||| | || ||||| | | ||| |||| |||| Sbjct 961390 CGTTGATGCCATCTCCACCGCAAATTGGAATGAAGCCGTATAGTAAATGAGTCAGGTTAG 961449 Query 54488 GCACGGGCACTTTGTCCATTGGAAAATTTCGTCCGTACACTCCCCATTCTACAAAATAGG 54547 | | || || || | ||| || |||| |||||| ||||||||||| || || | Sbjct 961450 GAATTGGAACACGATCGACTGGGAATTTTCTCGGGTACACACCCCATTCTACGAAGTATG 961509 Query 54548 CGGCCACAACTTT 54560 | | |||||||| Sbjct 961510 CTCCAACAACTTT 961522 >seq593 Length=2014934 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| ||||| || || || ||| |||| || || || ||||| || || Sbjct 755371 ATGCAGATTTTTGTTAAAACGCTAACAGGAAAGACTATCACACTGGAGGTGGAGCCATCA 755312 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||||| || ||| |||||||||||||| || ||||| || || ||||| Sbjct 755311 GACACAATTGAGAATGTAAAAGCGAAAATTCAAGACAAGGAGGGCATTCCCCCAGATCAG 755252 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || ||| | || | || || || || | ||||| || || |||| || ||||| Sbjct 755251 CAACGTCTTATCTTTGCGGGTAAGCAGCTCGAAGATGGTCGCACACTTTCAGACTACAAT 755192 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||||||||| ||||| | || |||||| | ||||| | || ||||| Sbjct 755191 ATTCAAAAGGAATCGACGCTTCACTTGGTTCTTCGTTTAAGAGGAGGCAT 755142 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || |||| |||||| |||| || | || || || || || Sbjct 755599 ATGCAGATCTTCGTTAAGACCTTGACAGGCAAGACTATCACATTAGAGGTTGAGCCATCT 755540 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || ||||| ||||||||||||||||| || || || || Sbjct 755539 GACACAATTGAAAATGTTAAGGCTAAAATCCAAGACAAAGAAGGCATTCCCCCAGACCAG 755480 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | || |||||||| | ||||| | || | || ||||||||| Sbjct 755479 CAGAGATTGATCTTTGCTGGCAAACAGCTTGAAGATGGACGCACATTGTCAGATTACAAC 755420 Query 27168 ATTCAAAAGGAGTCGAC 27184 || || || || || || Sbjct 755419 ATCCAGAAAGAATCTAC 755403 >seq2316 Length=6356476 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || |||||||| || || || || | || || | || || ||| | || Sbjct 2659345 ATGCAGATCTTCGTAAAAACCCTCACGGGTAAAACCATAACGTTAGAGGTTGAAGCCTCT 2659404 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || ||| ||||||||||||||||| ||||| || || ||||| Sbjct 2659405 GACACTATTGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCCCCAGATCAG 2659464 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | |||||||||||| || ||||| | || | ||||| |||||| Sbjct 2659465 CAAAGGTTGATCTTCGCCGGCAAACAGTTAGAAGATGGACGTACATTGTCCGACTACAAC 2659524 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || || ||||| || || | || ||||| ||| | |||| || || Sbjct 2659525 ATCCAGAAGGAATCAACACTTCACTTGGTGTTGAGGCTGCGAGGAGG 2659571 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434897339076480