Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq1964 159 8e-34 seq593 132 1e-25 seq802 95.1 3e-14 >seq1964 Length=1360 Score = 159 bits (176), Expect = 8e-34 Identities = 157/203 (77%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 |||||||| ||||| || |||||||| || || | || || | ||||| |||| |||| Sbjct 250 TGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTACGACCATCCTCCAACTGC 191 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 ||||| || ||||| || ||||| ||||| ||||| | ||||||||||| |||||||| Sbjct 190 TTGCCGGCAAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGGATCTTG 131 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || || ||||||||||| ||| |||||| || || ||||| || || || || Sbjct 130 GCCTTAACATTCTCGATGGTGTCCGAGGGTTCAACTTCTAGGGTGATTGTTTTGCCAGTC 71 Query 211092 AGAGTCTTTACAAACACCTGCAT 211114 |||||||| || || | |||||| Sbjct 70 AGAGTCTTGACGAAGATCTGCAT 48 >seq593 Length=2014934 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 210912 TGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGC 210971 || || ||||| || |||||||||||||| || | | || | ||||||||||| ||| Sbjct 755625 TGCAGGGTGGATTCCTTTTGGATGTTATAGTCGGACAATGTGCGTCCATCTTCCAACTGT 755684 Query 210972 TTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTT 211031 || || |||||||| || || || ||||| || |||| || |||||||| ||||||||| Sbjct 755685 TTACCGGCGAAGATGAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTT 755744 Query 211032 TGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTG 211091 || || || || || ||||| || || ||||| | ||||| ||||| || || Sbjct 755745 GCCTTAACATTCTCAATTGTGTCTGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCTGTC 755804 Query 211092 AGAGTCTTTACAAACACCTGCATTTT 211117 | ||||| ||||| | |||||| || Sbjct 755805 AATGTCTTCACAAAAATCTGCATCTT 755830 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | |||||| || || || ||||||||||| || || | |||||| | ||||| Sbjct 754932 AGTACCAAGTGAAGTGTTGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGGCCATCC 754991 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || ||||| ||||| || ||||| | | || ||||| || || | ||||| || ||| Sbjct 754992 TCTAGCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGGATACCTTCTTTATCC 755051 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| ||| || || || ||||| ||||| ||||||||| | ||||| ||| Sbjct 755052 TGGATCTTGGCTTTGACATTCTCAATGGTATCAGAAGGTTCAACCTCCAAGGTGATGGTC 755111 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | |||||| || || | ||||| Sbjct 755112 TTGCCTGTCAAAGTCTTCACGAAAATTTGCAT 755143 Score = 123 bits (136), Expect = 6e-23 Identities = 140/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 210927 TTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATA 210986 ||||||||||| || || | |||||| | ||||| || ||||| ||||| || ||||| Sbjct 754728 TTTTGGATGTTGTAGTCAGAAAGGGTACGGCCATCCTCTAGCTGTTTGCCAGCAAAGATC 754787 Query 210987 AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCG 211046 | | || ||||| || || | ||||||||||| |||||||| || || || ||| Sbjct 754788 AATCTCTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCG 754847 Query 211047 ATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAAC 211106 |||||||| ||| ||| || || | ||||| ||||| || || || || || ||||| Sbjct 754848 ATGGTGTCCGAGGGTTCTACTTCTAATGTGATAGTCTTGCCTGTCAGGGTTTTAACAAAG 754907 Query 211107 ACCTGCAT 211114 | |||||| Sbjct 754908 ATCTGCAT 754915 >seq802 Length=1346568 Score = 95.1 bits (104), Expect = 3e-14 Identities = 96/125 (77%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 210993 TGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTG 211052 || ||||| ||||| | ||| || ||||| || || ||| ||| || ||||| ||||| Sbjct 833170 TGCTGGTCTGGAGGGATTCCCTCTTTGTCTTGAATTTTTGCTTTGACATTTTCAATGGTA 833229 Query 211053 TCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGC 211112 || ||| |||||||||||| ||||| || || |||||||| || || || || | |||| Sbjct 833230 TCCGAGGGTTCAACCTCGAGGGTGATGGTTTTCCCCGTGAGGGTTTTCACGAAAATCTGC 833289 Query 211113 ATTTT 211117 || || Sbjct 833290 ATCTT 833294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159094464766010