Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq593 136 3e-27 >seq593 Length=2014934 Score = 136 bits (150), Expect = 3e-27 Identities = 177/244 (73%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 39041 ACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTT 39100 || ||||||| || |||||||||||| || | ||||| || ||||| || |||| Sbjct 755130 ACGAAAATTTG--CATGCCTCCTCTTAAACGAAGAACCAAGTGAAGCGTCGATTCCTTTT 755187 Query 39101 GTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGAC 39160 | ||||| || || | |||||| || | || || ||||| || |||||||| ||||||| Sbjct 755188 GAATATTGTAGTCTGAAAGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGAC 755247 Query 39161 GCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCG 39220 | ||||| || | ||| | || ||| ||||| |||||| ||| | || | | | Sbjct 755248 GTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGAATTTTCGCTTTTACATTCTCAATTG 755307 Query 39221 TATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTT 39280 | || | |||||| |||| |||||| | ||||| || |||||||||||||| || | Sbjct 755308 TGTCTGATGGCTCCACCTCCAGTGTGATAGTCTTTCCTGTTAGCGTTTTAACAAAAATCT 755367 Query 39281 GCAT 39284 |||| Sbjct 755368 GCAT 755371 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 || ||||| || ||| || ||||| || ||||| |||| | ||| ||| | || || Sbjct 755619 ACTAAATGCAGGGTGGATTCCTTTTGGATGTTATAGTCGGACAATGTGCGTCCATCTTCC 755678 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 | |||||| || || || || |||||||||||||| | ||| | || ||| ||||| | Sbjct 755679 AACTGTTTACCGGCGAAGATGAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGG 755738 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || || | || | | || || | |||||| |||| ||||| | || Sbjct 755739 ATCTTTGCCTTAACATTCTCAATTGTGTCTGAAGGCTCCACCTCCAAGGTGATGGTCTTG 755798 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || |||| || || ||||| || |||||||| Sbjct 755799 CCTGTCAATGTCTTCACAAAAATCTGCATCTT 755830 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429525319272962