Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq2316 150 1e-31 seq593 114 9e-21 seq1964 105 5e-18 seq802 102 6e-17 >seq2316 Length=6356476 Score = 150 bits (166), Expect = 1e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| ||||| |||||||||||||| ||||| || || | || ||||| || | Sbjct 2659344 AATGCAGATCTTCGTAAAAACCCTCACGGGTAAAACCATAACGTTAGAGGTTGAAGCCTC 2659403 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||||| ||||| |||||| |||||||| || | || |||||||| Sbjct 2659404 TGACACTATTGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCCCCAGATCA 2659463 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || | || || || ||||||||||| | ||||| | ||| || || ||| ||||| Sbjct 2659464 GCAAAGGTTGATCTTCGCCGGCAAACAGTTAGAAGATGGACGTACATTGTCCGACTACAA 2659523 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 ||| || || || || ||| | || || || || ||| |||||||||| Sbjct 2659524 CATCCAGAAGGAATCAACACTTCACTTGGTGTTGAGGCTGCGAGGAGG 2659571 >seq593 Length=2014934 Score = 114 bits (126), Expect = 9e-21 Identities = 153/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| |||||||| ||| | || || || || ||||| | || ||||| | | Sbjct 755599 ATGCAGATCTTCGTTAAGACCTTGACAGGCAAGACTATCACATTAGAGGTTGAGCCATCT 755540 Query 23671 GACACTGTTGAAA-TATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||||| | |||| | |||| | ||||||||||| | || ||||| || Sbjct 755539 GACACAATTGAAAATGTTAAGGCTAAAA-TCCAAGACAAAGAAGGCATTCCCCCAGACCA 755481 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| |||||||| || ||||| | |||||| || |||||||| Sbjct 755480 GCAGAGATTGATCTTTGCTGGCAAACAGCTTGAAGATGGACGCACATTGTCAGATTACAA 755421 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || ||||| || || | || ||||| Sbjct 755420 CATCCAGAAAGAATCTACTCTTCACTTAGT 755391 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||||||||| |||||||| || || ||||| || ||||| || || || || | | Sbjct 755372 AATGCAGATTTTTGTTAAAACGCTAACAGGAAAGACTATCACACTGGAGGTGGAGCCATC 755313 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| | ||||| |||||| ||||| || || | || |||||||| Sbjct 755312 AGACACAATTGAGAATGTAAAAGCGAAAATTCAAGACAAGGAGGGCATTCCCCCAGATCA 755253 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || ||||| || || || || ||||| | ||||| | || ||||| Sbjct 755252 GCAACGTCTTATCTTTGCGGGTAAGCAGCTCGAAGATGGTCGCACACTTTCAGACTACAA 755193 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGG 23837 || ||||| || || || | || || ||| | | || ||||||| Sbjct 755192 TATTCAAAAGGAATCGACGCTTCACTTGGTTCTTCGTTTAAGAGGAGG 755145 Score = 98.7 bits (108), Expect = 7e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || ||||||||||| || || || | || || || || ||||| | || || || | Sbjct 755830 AAGATGCAGATTTTTGTGAAGACATTGACAGGCAAGACCATCACCTTGGAGGTGGAGCCT 755771 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| |||| ||| |||| | ||| || ||||| || || | || ||||| Sbjct 755770 TCAGACACAATTGAGAATGTTAAGGC-AAAGATCCAAGACAAGGAGGGCATTCCCCCAGA 755712 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || |||||| | || || ||||| ||||| ||||||| | |||||| || ||| || Sbjct 755711 CCAGCAGCGTCTCATCTTCGCCGGTAAACAGTTGGAAGATGGACGCACATTGTCCGACTA 755652 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGT 23819 ||||| ||||| || ||||| | |||||||| Sbjct 755651 TAACATCCAAAAGGAATCCACCCTGCATTTAGT 755619 Score = 91.5 bits (100), Expect = 1e-13 Identities = 135/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||||||||| || || || || ||||| | ||||| || || || Sbjct 754915 ATGCAGATCTTTGTTAAAACCCTGACAGGCAAGACTATCACATTAGAAGTAGAACCCTCG 754856 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| |||| | || || ||||| |||||| | || ||||| || Sbjct 754855 GACACCATCGAGAATGTTAAGGC-CAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCA 754797 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||| | || || ||||| |||||||| || || || | || || | || ||||| Sbjct 754796 GCAGAGATTGATCTTTGCTGGCAAACAGCTAGAGGATGGCCGTACCCTTTCTGACTACAA 754737 Query 23790 CATACAAAA 23798 ||| ||||| Sbjct 754736 CATCCAAAA 754728 >seq1964 Length=1360 Score = 105 bits (116), Expect = 5e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || ||||| ||||| || |||||||| || || Sbjct 48 ATGCAGATCTTCGTCAAGACTCTGACTGGCAAAACAATCACCCTAGAAGTTGAACCCTCG 107 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| | || ||| |||| | || | | ||||| |||||| | || ||||| || Sbjct 108 GACACCATCGAGAATGTTAAGGCCAAGA-TCCAAGACAAGGAAGGTATCCCTCCAGACCA 166 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 || ||| | || ||||||||||| || |||| || | || || | ||| ||||| Sbjct 167 GCAACGTCTCATCTTTGCCGGCAAGCAGTTGGAGGATGGTCGTACACTCTCCGACTACAA 226 Query 23790 CATACAAAAAGAGTCCACATTACATTTAGT 23819 ||| || || ||||| || | ||||| || Sbjct 227 CATCCAGAAGGAGTCTACTCTTCATTTGGT 256 >seq802 Length=1346568 Score = 102 bits (112), Expect = 6e-17 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||||||||| |||||||||||||| ||||| ||||| ||||| ||||| || Sbjct 833294 AAGATGCAGATTTTCGTGAAAACCCTCACGGGGAAAACCATCACCCTCGAGGTTGAACCC 833235 Query 23668 ACGGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGAT 23727 |||| || |||||| | ||| ||||||| |||||||| || | || ||||| Sbjct 833234 TCGGATACCATTGAAAATGTCAAAGCAAAAATTCAAGACAAAGAGGGAATCCCTCCAGAC 833175 Query 23728 CAACAG 23733 || ||| Sbjct 833174 CAGCAG 833169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337993641087992