Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq593 149 1e-30 seq1964 141 2e-28 seq3874 125 2e-23 seq3871 120 7e-22 seq687 120 7e-22 seq334 89.7 1e-12 >seq593 Length=2014934 Score = 149 bits (164), Expect = 1e-30 Identities = 160/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| ||||| |||||||| |||| |||||||| | ||| || | |||||| Sbjct 755388 AGCACTAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAATCTGACAATGTGCGTCCATCT 755447 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||| || ||||| ||||| | || || ||||| || ||||| ||||| |||||| Sbjct 755448 TCAAGCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCTTCTTTGTCT 755507 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 ||||| || ||| ||| ||| || ||||| || | || || ||||| ||||| ||| Sbjct 755508 TGGATTTTAGCCTTAACATTTTCAATTGTGTCAGATGGCTCAACCTCTAATGTGATAGTC 755567 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| ||||| || || | ||| | ||||| Sbjct 755568 TTGCCTGTCAAGGTCTTAACGAAGATCTGCAT 755599 Score = 147 bits (162), Expect = 5e-30 Identities = 156/206 (76%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || || |||||||| ||||||| || || |||| ||| || | |||||||| | ||| Sbjct 755625 TGCAGGGTGGATTCCTTTTGGATGTTATAGTCGGACAATGTGCGTCCATCTTCCAACTGT 755684 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || |||||||| || || || ||||| || ||||| || |||||||||||||||||| Sbjct 755685 TTACCGGCGAAGATGAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTTT 755744 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| ||| || || |||||||| | ||||| || || ||||| |||||||| ||| Sbjct 755745 GCCTTAACATTCTCAATTGTGTCTGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCTGTC 755804 Query 225691 AAAGTTTTTATGAACACTTGCATTTT 225716 || || || | || | ||||| || Sbjct 755805 AATGTCTTCACAAAAATCTGCATCTT 755830 Score = 136 bits (150), Expect = 9e-27 Identities = 134/173 (77%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 225526 TTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGCTTCCCAGCGAAGATA 225585 ||||||| ||||| || | | || | ||||| |||||||| || ||||| ||||| Sbjct 754728 TTTTGGATGTTGTAGTCAGAAAGGGTACGGCCATCCTCTAGCTGTTTGCCAGCAAAGATC 754787 Query 225586 AGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTTTGCTTCACAGCTTCG 225645 | || || ||||| || || ||||||||||||||||||||||| ||| ||| ||| Sbjct 754788 AATCTCTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCG 754847 Query 225646 ATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTCAAAGTTTT 225698 |||||||| |||| ||| || ||||| ||||| |||||||| |||| ||||| Sbjct 754848 ATGGTGTCCGAGGGTTCTACTTCTAATGTGATAGTCTTGCCTGTCAGGGTTTT 754900 Score = 118 bits (130), Expect = 3e-21 Identities = 156/214 (73%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 || || | ||| || || ||||| ||||| | |||||| || | | || | |||||| Sbjct 755160 AGAACCAAGTGAAGCGTCGATTCCTTTTGAATATTGTAGTCTGAAAGTGTGCGACCATCT 755219 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || |||||||| || || |||||||| ||||| || || || ||||| || ||||||||| Sbjct 755220 TCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCT 755279 Query 225622 TGGATCTTTTGC-TTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 || || ||| || || ||| || || |||||||| | ||||| || | ||||| || Sbjct 755280 TGAAT-TTTCGCTTTTACATTCTCAATTGTGTCTGATGGCTCCACCTCCAGTGTGATAGT 755338 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| || || | ||||| | || | |||||| Sbjct 755339 CTTTCCTGTTAGCGTTTTAACAAAAATCTGCATT 755372 >seq1964 Length=1360 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 225511 TGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCTTCTAGCTGC 225570 || ||||| || || || |||| ||||| |||| | || | ||||| || | |||| Sbjct 250 TGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTACGACCATCCTCCAACTGC 191 Query 225571 TTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGATCTTT 225630 || || || ||||| || ||||| ||||| || || ||||||||||||||||||||||| Sbjct 190 TTGCCGGCAAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGGATCTTG 131 Query 225631 TGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGCCCGTC 225690 ||| ||| ||||||||||| |||| ||| || |||| ||||| || ||||| ||| Sbjct 130 GCCTTAACATTCTCGATGGTGTCCGAGGGTTCAACTTCTAGGGTGATTGTTTTGCCAGTC 71 Query 225691 AAAGTTTTTATGAACACTTGCAT 225713 | ||| || | ||| | ||||| Sbjct 70 AGAGTCTTGACGAAGATCTGCAT 48 >seq3874 Length=15256 Score = 125 bits (138), Expect = 2e-23 Identities = 132/174 (76%), Gaps = 0/174 (0%) Strand=Plus/Plus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || |||| |||| || ||||| ||| |||| ||||| ||| | ||||| Sbjct 1596 CAAATTTATAATACTATTGTTACAGCTCATGCTTTTATTATAATTTTTTTTATAGTTATA 1655 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || || ||||||||||| || || ||||| | || ||||||||| Sbjct 1656 CCTATTATAATTGGAGGATTTGGAAATTGATTAGTCCCATTAATATTAGGAGCTCCTGAT 1715 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725 || ||||| || | | || |||||||| ||||||||||| || || || ||| Sbjct 1716 ATAGCTTTCCCCCGAATAAATAATATAAGATTTTGATTACTTCCCCCATCATTA 1769 Score = 84.2 bits (92), Expect = 5e-11 Identities = 78/99 (79%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||||||||||||||| ||||||||||| || | |||||||| || || |||| Sbjct 2168 TTCTGGATGACCAAAAAATCAAAATAAATGTTGGTATAAAATAGGATCACCACCTCCTGC 2109 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||||||||||| ||||| | || | ||| ||||| Sbjct 2108 AGGATCAAAAAAAGATGTATTTAGGTTACGATCTGTTAA 2070 >seq3871 Length=15277 Score = 120 bits (132), Expect = 7e-22 Identities = 156/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 7510 GAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAACGTTATT 7569 ||||||| |||| ||||||| ||| ||| || ||| |||| || |||| Sbjct 429 GAATTAGGAACTCCAGGTTCTCTAAT------TGGGGATGATCAAATTTATAATACTATT 482 Query 7570 ATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGT 7629 |||| || || || ||| |||| ||||| ||| | ||||| || |||| || || || Sbjct 483 GTTACAGCCCACGCTTTTATTATAATTTTTTTTATAGTTATACCTATTATAATTGGAGGA 542 Query 7630 TTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTT 7689 || ||||||||||| || || ||||| | || || |||||||| ||||| || | | Sbjct 543 TTTGGAAATTGATTAGTCCCATTAATATTAGGAGCCCCTGATATAGCTTTCCCCCGAATA 602 Query 7690 AACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725 || |||||||| ||||||||||| || || ||| || Sbjct 603 AATAATATAAGATTTTGATTACTTCCCCCATCCCTA 638 Score = 98.7 bits (108), Expect = 2e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||||||||||||||| |||||||||||||| | ||||| || ||||| || | Sbjct 1037 TTCTGGATGACCAAAAAATCAAAATAAATGTTGATATAAAATAGGGTCACCTCCTCCCGC 978 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 |||||||||||| ||||| ||||| | ||| ||||| Sbjct 977 AGGATCAAAAAAGGATGTATTTAAATTACGATCTGTTAA 939 >seq687 Length=15277 Score = 120 bits (132), Expect = 7e-22 Identities = 156/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 7510 GAATTAGCTGCTCCGGGTTCTCAAATATTGAGTGGTAATAGCCAACTTTACAACGTTATT 7569 ||||||| |||| ||||||| ||| ||| || ||| |||| || |||| Sbjct 429 GAATTAGGAACTCCAGGTTCTCTAAT------TGGGGATGATCAAATTTATAATACTATT 482 Query 7570 ATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATGCCGGTTATGATAGGCGGT 7629 |||| || || || ||| |||| ||||| ||| | ||||| || |||| || || || Sbjct 483 GTTACAGCCCACGCTTTTATTATAATTTTTTTTATAGTTATACCTATTATAATTGGAGGA 542 Query 7630 TTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGATATGGCTTTTCCAAGGCTT 7689 || ||||||||||| || || ||||| | || || |||||||| ||||| || | | Sbjct 543 TTTGGAAATTGATTAGTCCCATTAATATTAGGAGCCCCTGATATAGCTTTCCCCCGAATA 602 Query 7690 AACAATATAAGTTTTTGATTACTACCGCCTTCCTTA 7725 || |||||||| ||||||||||| || || ||| || Sbjct 603 AATAATATAAGATTTTGATTACTTCCCCCATCCCTA 638 Score = 98.7 bits (108), Expect = 2e-15 Identities = 81/99 (82%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||||||||||||||| |||||||||||||| | ||||| || ||||| || | Sbjct 1037 TTCTGGATGACCAAAAAATCAAAATAAATGTTGATATAAAATAGGGTCACCTCCTCCCGC 978 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 |||||||||||| ||||| ||||| | ||| ||||| Sbjct 977 AGGATCAAAAAAGGATGTATTTAAATTACGATCTGTTAA 939 >seq334 Length=1881 Score = 89.7 bits (98), Expect = 1e-12 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||||||||||||||| |||||||||||||| | ||||| || ||||| || | Sbjct 1378 TTCTGGATGACCAAAAAATCAAAATAAATGTTGATATAAAATAGGGTCACCTCCTCCCGC 1437 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 || || |||||| ||||| ||||| | ||| ||||| Sbjct 1438 AGGGTCGAAAAAGGATGTATTTAAATTACGATCTGTTAA 1476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192472007968556