Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq3650 244 9e-60 seq3450 82.4 6e-11 >seq3650 Length=1334389 Score = 244 bits (270), Expect = 9e-60 Identities = 637/964 (66%), Gaps = 17/964 (2%) Strand=Plus/Minus Query 109141 GCGTACTTTGTCGAATGGGGTGTGTACGGCCGCAATTTTCCCGTGGACAAAGTGCCGTTG 109200 || ||||| || ||||||||||||||| | || || || || || || || | Sbjct 961510 GCATACTTCGTAGAATGGGGTGTGTACCCGAGAAAATTCCCAGTCGATCGTGTTCCAATT 961451 Query 109201 CCCAATTTATCGCATTTGCTGTACGGTTTTATTCCAATATGTGGCGGCGACGGCATCAAC 109260 || || | | ||||| || ||||| || |||||||| || || || || ||||||||| Sbjct 961450 CCTAACCTGACTCATTTACTATACGGCTTCATTCCAATTTGCGGTGGAGATGGCATCAAC 961391 Query 109261 GACGCCCTCAAAACCATTCCCGGCAGTTTTGACGCTTTGCAACGATCGTGCCGCGGTCGC 109320 ||| | | ||| || |||||||| | ||| | || |||||||| |||| || Sbjct 961390 GACAGCTTAAAAGAGATCGAAGGCAGTTTCCAAGCTCTTCAGAGATCGTGCAGCGGCCGA 961331 Query 109321 GACGATTTCAAAGTGTCCATACACGACATTTGGGCCGCGGTGCAAAAACCGCAAAAAGGC 109380 || ||||||||||| || || ||||| ||||||||| | || ||||| || || || Sbjct 961330 GAAGATTTCAAAGTATCTATTCACGATCCTTGGGCCGCTCTTCAGAAACCACAGAAGGGA 961271 Query 109381 GTGACCGCGTGGAACGAGCCGTACAAAGGCAACTTTGGACAATTGATGGCGGCCAAATTG 109440 || | | |||||||| || ||||||||||||||||| || ||||| | |||| Sbjct 961270 TTGTCTTCCTGGAACGAACCTTACAAAGGCAACTTTGGCCAGCTGATGTCTCTCAAACAA 961211 Query 109441 GCAAATCCTCACGTTAAAATTCTACCGTCCATAGGCGGGTGGACGTTGTCGGACCCGTTT 109500 || | ||| | |||| || ||||| ||||| || || ||||| | | || || || Sbjct 961210 GCCAGGCCTGAACTTAAGATCCTACCTTCCATCGGTGGTTGGACACTAGCCGATCCCTTC 961151 Query 109501 TATTTTATGCA-CGATTCGGCGAAAAGAGCCACATTCGTTGAATCGGTGCGCGAATTTTT 109559 | | || | || ||| || ||| |||| |||||||| || || || ||| Sbjct 961150 T-TCTTCTTCACCGACAAGGAGAAGAGAGATCGCTTCGTTGATTCTGT---AAAAGATTT 961095 Query 109560 ACAAGTG---TGGAAATTCTTTGACGGCGTCGACATTGATTGGGAGTTTCCGGGCGGCAA 109616 | || ||||| ||||| || || || ||||| |||||||| || || || || || Sbjct 961094 CCTCTTGACCTGGAAGTTCTTCGATGGTGTTGACATCGATTGGGAATTCCCTGGAGGTAA 961035 Query 109617 GGGTGCCAATCCGAGTCTCGGCGACGCAACGCGCGACAGCAAAACGTACATTGCGTTGTT 109676 ||| || || || ||||| | || ||| | | ||| ||| || | Sbjct 961034 GGGAGCTAACCCCGACCTCGGTAGC---CCGAAAGACGGAGATGTTTACGTTGAATTAAT 960978 Query 109677 AAAAGAGTTGCGCGCCATGTTGGACGA-CTTGC--AAACGGCCACCAACAAAACGTACGA 109733 || || ||||| | |||||| |||| ||| | || | || || ||| ||||| Sbjct 960977 GAAGGAATTGCGTGAAATGTTGAACGACCTTTCTGAAGAGACCGGTAAGAAA---TACGA 960921 Query 109734 ATTGACGAGCGCCATTAGCGCCGGTTACGATAAAATTGACGTGGTCGATTACGCGTCGGC 109793 |||| ||| || || || || | ||||| || | || ||||||||| || Sbjct 960920 GCTGACCTCCGCTATCAGTGCTGGATGGGATAAGATCCAAGTTGTCGATTACAGTGAAGC 960861 Query 109794 GCAACAATATTTGGACAAAATATTTTTAATGACATACGATTTCAAAGGCGCTTGGTCAAA 109853 ||| | ||| ||||| | || || | |||| || ||||| |||||||| ||||| || Sbjct 960860 TCAAAAGTATATGGACCATATCTTCCTTATGAGTTATGATTTTAAAGGCGCCTGGTCTAA 960801 Query 109854 CACGGACTTAGGCTATCACACGACTGTGTACGCGCCCACGTGGAATCCAAACGAATTGTA 109913 | | | || |||| || | | ||||| ||| | ||||| || || ||| || Sbjct 960800 CGACACCCTCGGTCATCAGACTCCACTTTACGCACCCGCTTGGAACCCTAAGGAAACTTA 960741 Query 109914 CACGACCGATGTGGCGGTCAAAGAGCTGTTCAAACAAAAAGTGTCGCCTaaaaaaaTTAT 109973 || || || | | || ||| | || | ||| ||| ||||| || ||| | Sbjct 960740 TACCACTGACTTTGGTGTGAAATATTTGCTTGCTCAAGGCGTGAACCCTAAGAAGATTGT 960681 Query 109974 AATTGGCGTAGCGATGTACGGCCGCGGCTGGACGGGCGTCGTGCACGCCGACGACGCGAA 110033 | |||||||| |||||||| ||||||||||| || || | ||| ||| || Sbjct 960680 GGTGGGCGTAGCTATGTACGGACGCGGCTGGACTGGTGTTCATAATTACGAAGACAACAA 960621 Query 110034 TCCGTTTTTGGGCATCGCCTCCGGTCCCGTGGAAGGCACTTGGGAAAACGGCGTGGTGGA 110093 ||| || |||| ||| | || || || |||| |||||| || |||| || || || Sbjct 960620 TCCATTCACTGGCAACGCGACTGGACCAGTCAAAGGTACTTGGCAAGACGGTGTAGTTGA 960561 Query 110094 CTAT 110097 |||| Sbjct 960560 CTAT 960557 >seq3450 Length=502752 Score = 82.4 bits (90), Expect = 6e-11 Identities = 103/139 (74%), Gaps = 8/139 (6%) Strand=Plus/Plus Query 103374 GACGTTGCCCAAATCGCCAACGTGTCTGACGAGCGCGTCGGGCGCGCCGTGC----GTTT 103429 || |||||| | |||||| || || | ||| ||| ||||||||||||| | || Sbjct 192357 GATGTTGCCGAGATCGCCGACATGGCGCACGGTGGCGGTGGGCGCGCCGTGCTCCTGCTT 192416 Query 103430 CGCCGGTGGGATTAAAATGTTCGCCGGCCGACGTGCAGCCGTTGCTTGTGTCGCCAAACT 103489 | | |||| || || ||| ||||||| |||||||||||||| | |||| ||||||| Sbjct 192417 CCC---TGGG-TTGAAGTGTGCGCCGGCGGACGTGCAGCCGTTTGTGTTGTCACCAAACT 192472 Query 103490 CGTGCACGTGAAAACCGTG 103508 | ||||| || ||||| || Sbjct 192473 CATGCACATGGAAACCATG 192491 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409641458121366