Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq2316 618 6e-172 seq2205 107 3e-18 seq348 104 3e-17 >seq2316 Length=6356476 Score = 618 bits (684), Expect = 6e-172 Identities = 1202/1765 (68%), Gaps = 14/1765 (1%) Strand=Plus/Plus Query 76782 GTAAACTGAATTGGAGAAGATGCGGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGA 76841 || |||||||| | | || || || ||| |||||| ||| ||||| || ||||| | | Sbjct 2965206 GTGAACTGAATAGCATTAGCAGCAGGCTTTATACGTAAATAATACATTCCTGTTTTCAAA 2965265 Query 76842 CCCAGACTCCATCCGTAGAAATGCATGCTTGTCAGTTTGGAATAACTAGGATCGGCTATA 76901 |||| ||||| |||| || || || ||||| ||| |||| | || || || | | Sbjct 2965266 CCCATTTTCCATGCGTAAAAGTGAATTGATGTCAATTTTCCATAATTCGGTTCAGCCACA 2965325 Query 76902 TGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATA 76961 ||||| || | || |||||||| || || || || |||| |||||| |||||||| || Sbjct 2965326 TGAATGTTAAAAGATTGACTTTGGTCTATAAATGCACCTCGATCAGCAGCCATTTTAATT 2965385 Query 76962 ATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAAG- 77020 | || || || ||| ||||||| ||||| | | || | | || || | ||| | Sbjct 2965386 GTAGTTTTAACAGAAATCTCCCAAACTGTTTTATACAATTCTCTAATGTCCTTTGGTATA 2965445 Query 77021 -GTTTG-TATTTTGAATGGAACCACCATC-TGATATAATTGTATTCTTTATATCATCATT 77077 | | | ||||||||||||||||| | ||| || || ||| || || || || | Sbjct 2965446 CGCTCGATATTTTGAATGGAACCATTGTTGTGA-ATTATCAGATTTTTCATGTCGTCGTC 2965504 Query 77078 CCACAATTTCCTCTCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCC 77137 ||| || | || || || ||| | | |||| | ||||| | || ||||| || Sbjct 2965505 CCATAAATCTGCCTGCGTCAAGTCTCGCAACAAATGATGGTTAACAACCTGGAATTCCCC 2965564 Query 77138 AGACAATACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCC 77197 |||||| || | | |||||| || ||| ||||||| | |||||||||||||| Sbjct 2965565 AGACAAAACACGTCTTTGGTAAATGTTTGATGTAAATGGTTCAAAGGATTCATTGTTTCC 2965624 Query 77198 CAAAATTTGAGCAGTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACC 77257 ||| ||||| || ||||| || || ||||| || || | || | ||| | || || Sbjct 2965625 CAAGATTTGGGCTGTAGACGCTGTAGGCATTGGAGCTAATAAAAGCGAATTGCGCAGCCC 2965684 Query 77258 ATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATC 77317 |||| | ||||| ||||||| | ||| ||||| ||||| || || ||| Sbjct 2965685 ATGTTTGGCAATTTTTTCTTTTAAAACAGACCAGTCCCAGAGATCAGATGGAGTTTTATC 2965744 Query 77318 CCAAAGATCGTATTGTAGAATTCCGTTACTAGCATATGATCCATTATATGTTTCATAAGG 77377 ||| | || ||||| | ||| || | || || ||| | |||||| |||| Sbjct 2965745 CCACATGTCATATTGCAAAATGCCTTGGCTTGCTGGACTTCCTTCATATGTACTATAAAC 2965804 Query 77378 TCCTTCTGTTTCAGCTAGTTCACAACTCGCTTCCAATGCTCCGTAATAAATTGTTTCGAA 77437 ||||||| ||| || ||||| ||||| ||||| |||||||||||||| || |||||||| Sbjct 2965805 TCCTTCTCTTTGCGCCAGTTCGCAACTGGCTTCTAATGCTCCGTAATATATCGTTTCGAA 2965864 Query 77438 AATCTTCTTATTGAGATCTTGTGCTTCAATACTATCAAACGGATAATGTAAAAGAATAAA 77497 || | | || || | ||| | ||| ||| | ||| | | |||| ||| Sbjct 2965865 GATTTGTTGGTTAAGTTTAATTGCCTTGTCACTTTCATAAGGAATGCGCATCAGAACAAA 2965924 Query 77498 GGCATCTGCTAATCCCTGAACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTT 77557 | ||| ||||| || || |||||||| ||||| ||||| || | | | |||||| | || Sbjct 2965925 TGTATCAGCTAACCCTTGCACTCCAATCCCAATTGGTCTGTGGCGCATGTTGGAATTCTT 2965984 Query 77558 AGCTTCTGGAATAGGATAATAATTAATGTCTATAATTTTATTGAGATTTCTAACAACTAC 77617 |||||||| | || ||| |||||| || ||||||||||| || ||| | || Sbjct 2965985 TGCTTCTGGCACTGGGTAAAAATTAACATCAATAATTTTATTAAGGTTTTGTGTGATTAT 2966044 Query 77618 TTTAACCACGTCCTTTAGTTTAAGAAAATCAAATCTTCCATCT---ATAACAAACATGTT 77674 || || || | | || ||| | || || |||| |||||||| |||| Sbjct 2966045 CTTTGTGACTTCTCTCAACTTTGTAAAGTTGTATGTTTTATCTTCATTAACAAACCTGTT 2966104 Query 77675 CAAAGCTATAGATGCTAGATTACAAACTGCTACCTCATTAGCGTTGGCATATTGTATTAT 77734 |||||| ||||| |||| ||||||||| || || |||| || | |||| | || Sbjct 2966105 CAAAGCAATAGAAGCTAAATTACAAACAGCAACTTCATCTGCTGAAGTGTATTCAACAAT 2966164 Query 77735 CTCGGTACATAGATTACTACATTTGATAGTGCCCAGATTTTGTTGGTTGCTCTTTTTATT 77794 || || || | |||||| ||||| || ||||| ||||||| ||| ||||| ||| | || Sbjct 2966165 TTCTGTGCACAAATTACTGCATTTAATGGTGCCAAGATTTTTTTGATTGCTTTTTCTGTT 2966224 Query 77795 GCATGAGTCCTTATAAAGAATAAACGGAGTCCCGGTTTCAATCTGTGATTCGATAATAGA 77854 || || || ||||| | ||| | || || || ||||| | |||| ||| || || | Sbjct 2966225 ACAAGAATCTTTATATAACATATATGGTGTGCCTGTTTCCACTTGTGCTTCTATGATTGC 2966284 Query 77855 TTTCCAGACGACTCTAGCTTTTATCATAGATT--TGTATCGCCTCTCTCTTTCATATTGA 77912 |||||| | || |||| | | | || ||| | | || ||||||||| Sbjct 2966285 TTTCCACAGTTCTTGAGCTCGGA--CTTGCTTAACAAATCTCTTTTCCTCTTCATATTGC 2966342 Query 77913 GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972 ||||| ||||||||| ||||||||| || | | || ||||| |||| ||| Sbjct 2966343 CCATATAATGCTTCAAATTCTTCTCCCCAACAGTCGGCAAGACCGGGGCAATCATGAGGG 2966402 Query 77973 CACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032 ||||| || ||| |||||| | ||| || |||||||| | ||| || |||||| Sbjct 2966403 CACATTAAACTCCACATTTCATCTTTTTCAACACGCTTCATAAACAAATCTGGGATCCAT 2966462 Query 78033 AGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCG 78092 | ||| |||||| |||| || ||| |||||| || || ||||||||||| ||||| Sbjct 2966463 AATGCATAAAATAGTTCTCTGGCTCTGACTTCTTCTTTGCCAGTATTCTTTTTCAGATCT 2966522 Query 78093 AGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGT 78152 | |||||| | | |||||| ||||| ||||||| || || || | | || |||||| Sbjct 2966523 AAAAACTCAAACACATCAGAGTGCCAGGGTTCTAAGTAAATAGCAAATGCACCTGGTCGT 2966582 Query 78153 TTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATA 78212 || || ||||| || || | ||| || || || ||||| || |||| ||||||||| | | Sbjct 2966583 TTGTTGCCTCCTTGGTCAACATACCTTGCTGTATTATTGTACACTCGCAACATTGGTACA 2966642 Query 78213 ATACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTA 78272 | ||| || ||| || || || || | |||||| | || |||| | |||| | | Sbjct 2966643 AGACCATTGGATACACCGTTAGTACCTGCTATATAAGTACCTTTTGCTCTAATACAATGA 2966702 Query 78273 ATGGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCG 78332 | || || || || || || || || |||| || || |||| | ||| || Sbjct 2966703 ACATGTAGTCCAATGCCACCAGCTGATTTTGAGATTAATGCACATTGTTTTAGTGTGTCA 2966762 Query 78333 TAGATACCCTCTATACTGTCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATG 78391 || ||||| || || |||||||| |||| | || | || || || ||||| ||| | Sbjct 2966763 TATATACCTTCAATGCTGTCATCTTTCATAGCTATG-AGGAAGCAAGAAGACAATTGTGG 2966821 Query 78392 ATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAG 78451 |||| ||||| |||||||| ||| ||||| ||||| |||||||||| | Sbjct 2966822 TCTCGGAGTTGCTGCAGAGAATAATGTGGGACTGGCATGTGTAAAGTATTTTTCAGACAA 2966881 Query 78452 TAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACG 78511 || ||||| |||||||| ||||| || ||||| ||| ||||| | | || || Sbjct 2966882 TAAGTTGTAGGTTTCAATGGCTGAATCAATGTCTTCACCATGGATTCCAATTGAGACCCG 2966941 Query 78512 CATCAACATATGCTGAGGTCTTTCA 78536 ||||| ||||||||| ||||||||| Sbjct 2966942 CATCAGCATATGCTGGGGTCTTTCA 2966966 >seq2205 Length=3731788 Score = 107 bits (118), Expect = 3e-18 Identities = 231/345 (67%), Gaps = 3/345 (1%) Strand=Plus/Minus Query 170984 CCTATGTTAGCAGAATCATGTGATTCTGTTAACAAGGCATTTAAAAAATTTCCATCTGGA 171043 ||||||||||| ||| ||||| | ||| | | | ||| | || |||| |||| ||| Sbjct 1151087 CCTATGTTAGCTGAAGCATGTAAATCTATAGAAATGGCTATGAAGAAATGTCCAAACGGA 1151028 Query 171044 ATGTTTGCAGAAGTAAAATATGATGGTGAACGAGTCCAAGTTCATAAAAACAATAATAAT 171103 ||||| | ||| ||||||||||||||||| |||| |||||||||||||| | | | Sbjct 1151027 ATGTTCTCGGAAATAAAATATGATGGTGAAAGAGTTCAAGTTCATAAAAAAGGTTCTGAA 1150968 Query 171104 TTTGCCTTCTTTAGCAGAAACATGAAACCAGTTTTACCACATAAAGTTGATTATCTCAAG 171163 ||| | ||| || | || | || | |||||||||| || || | || Sbjct 1150967 TTTAAATATTTTTCTCGAGCTCTTAAGGCTGTAATGGCACATAAAGTAAATCATTTAAAA 1150908 Query 171164 GAATACCTTCCTAAAGCATTTAAAAAAGCTACCTCTATTATCTTGGATTCCGAAATTGTT 171223 ||||| | || || |||||| |||| |||| | | | | ||| | |||||| | Sbjct 1150907 GAATATTTGCCGAAGGCATTTCCTAAAGGTACCGATTTGGTACTAGATGCAGAAATTTTA 1150848 Query 171224 CTAGTTGATGAACATAATG---TTCCACTTCCGTTTGGAAGTCTAGGAATACACAAAAAG 171280 || ||||||| | | || || | || ||||| | |||| ||||||||| || Sbjct 1150847 CTGGTTGATGTGAAAACTGGGAAACCTTTACCATTTGGTACATTAGGTATACACAAACAG 1150788 Query 171281 AAAGAGTACAAAAATGCTAATATGTGTTTGTTCGTCTTTGATTGT 171325 | | |||| ||||| | | ||| | | ||| ||||||||| Sbjct 1150787 TCTGCATTCAAAGATGCTGAAGTATGTCTATACGTTTTTGATTGT 1150743 >seq348 Length=4065129 Score = 104 bits (114), Expect = 3e-17 Identities = 154/218 (71%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||| ||| ||| | ||| || || || | ||||||||| | ||||| || || Sbjct 3297631 TCATCCCTAGAAATCAGTTCATTGCTGAAGGTCAAACCGGGCATCAAGCCACGCTTCTTC 3297572 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 | ||| ||||||| || ||| ||| |||||||| ||||||||||| ||||||||||| Sbjct 3297571 AACCAGAATATTGATGCAAAACTTCCGGAAAAGAAGATGCCTTCTACAGCCGCAAATGCA 3297512 Query 48285 GTAAGTCTCTCTCCGTAACTGGCT---TCGTTGTGTATCCACCGTTGTGCCCAATCAGCC 48341 | |||||||| | | ||| | | || ||||| || |||||| || ||| Sbjct 3297511 ACTATCCTCTCTCCAAAGTTTGCTGTCTTGCTGGCGATCCATTGTAATGCCCAGTCTGCC 3297452 Query 48342 TTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 48379 || || || |||||||| | || || || ||||| || Sbjct 3297451 TTTTTTTTCACACAAGGTAAAGTCTCAATGGCATTGAA 3297414 Score = 98.7 bits (108), Expect = 1e-15 Identities = 129/177 (73%), Gaps = 4/177 (2%) Strand=Plus/Minus Query 48411 TAAGTATCTATTA--AAAGACTATACATTTCGGAGTGAATATTTTCAATTGCCATCTGAA 48468 ||||||||||| | || || |||||| || ||||| | ||| || || || || || | Sbjct 3297235 TAAGTATCTATCAGCAATGA--ATACATCTCAGAGTGTACATTCTCCATAGCAATTTGGA 3297178 Query 48469 ATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTACAAAATCGTTCAGCCAAAT 48528 |||||||||| | || ||||| || || || || ||||||| || ||| || Sbjct 3297177 ATCCGTAAAAGAACCTTGCTTCACCAATTTGAACTTCTTGTGAAAATCGCTCTACCAGAT 3297118 Query 48529 TCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAATACATGTTTAATAAAAT 48585 | ||||| || || ||||| ||||||||||| || || |||||||| ||||||| Sbjct 3297117 TTTCATTAACAATACCATCGGAGGCAGCAAAAAACGCCAAGACATGTTTTATAAAAT 3297061 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694635160663360