Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2316 616 2e-171 seq348 109 8e-19 >seq2316 Length=6356476 Score = 616 bits (682), Expect = 2e-171 Identities = 1221/1790 (68%), Gaps = 32/1790 (2%) Strand=Plus/Plus Query 75368 TTATCCAACGTGAACTGAATGGGAGAGGATGCTGGTTTTGTACGTAGATAGTACATACCA 75427 || || | |||||||||||| | | | || || ||| |||||| ||| ||||| || Sbjct 2965197 TTGTCAACCGTGAACTGAATAGCATTAGCAGCAGGCTTTATACGTAAATAATACATTCCT 2965256 Query 75428 GTTTTTAGACCCAGACTCCATCCGTAGAAATGCATGCTTGTTAGTTTGGAATAACTCGGA 75487 ||||| | ||||| ||||| |||| || || || ||| | ||| |||| |||| Sbjct 2965257 GTTTTCAAACCCATTTTCCATGCGTAAAAGTGAATTGATGTCAATTTTCCATAATTCGGT 2965316 Query 75488 TCGGCTATATGAATATTCATCGACTGACTTTGATCGATGAAAGCTCCTCTATCAGCCGCC 75547 || || | |||||| || | || |||||||| || || || || |||| |||||| ||| Sbjct 2965317 TCAGCCACATGAATGTTAAAAGATTGACTTTGGTCTATAAATGCACCTCGATCAGCAGCC 2965376 Query 75548 ATTTTTATAATGGTCTTTTGAGGAATTTCCCAAATAGTTTTGAAAACTTGTTTGATATCA 75607 ||||| || | || || || ||| ||||||| ||||| | | || | | || || Sbjct 2965377 ATTTTAATTGTAGTTTTAACAGAAATCTCCCAAACTGTTTTATACAATTCTCTAATGTCC 2965436 Query 75608 TCTGGAAGAT--TTG-TATTTTGAATGGATCCGCCATCAGATAT-AATTGT---ATTCTT 75660 | ||| | | | | ||||||||||||| || || | | | |||| | ||| || Sbjct 2965437 TTTGGTATACGCTCGATATTTTGAATGGAACC---ATT-GTTGTGAATTATCAGATTTTT 2965492 Query 75661 GATCTCATCATTCCACAATTTTCTCTCGGTTAAAACTCTAAGGAGATGAGGATTAACAAT 75720 || || || | ||| || | | || || || ||| | | |||| | ||||||| Sbjct 2965493 CATGTCGTCGTCCCATAAATCTGCCTGCGTCAAGTCTCGCAACAAATGATGGTTAACAAC 2965552 Query 75721 TTGAAATTCTCCAGACAATACTCTTCGAGTGTAAATATTACTGGTATATGGTTCCACAGA 75780 || ||||| |||||||| || | || |||||| || ||| ||||||| | || Sbjct 2965553 CTGGAATTCCCCAGACAAAACACGTCTTTGGTAAATGTTTGATGTAAATGGTTCAAAGGA 2965612 Query 75781 TTCATTGTTTCCCAAAATTTGAGCAGTTGAAGCAGTCGGCATAGGTGCCACCAATAAACT 75840 ||||||||||||||| ||||| || || || || || ||||| || || | || | Sbjct 2965613 TTCATTGTTTCCCAAGATTTGGGCTGTAGACGCTGTAGGCATTGGAGCTAATAAAAGCGA 2965672 Query 75841 ATTTCTGAGACCATGTGTTCTGATTTTATCTTTTAGATATTTCCAATCCCAAAGATCTGA 75900 ||| | || |||||| | ||||| ||||||| | ||| ||||| ||||| || Sbjct 2965673 ATTGCGCAGCCCATGTTTGGCAATTTTTTCTTTTAAAACAGACCAGTCCCAGAGATCAGA 2965732 Query 75901 TGGTACAACATCCCAGAGATCGTATTGTAGAATTCCGTTGCTAGCATATGATCCATTATA 75960 ||| |||||| | || ||||| | ||| || | ||| || ||| | ||| Sbjct 2965733 TGGAGTTTTATCCCACATGTCATATTGCAAAATGCCTTGGCTTGCTGGACTTCCTTCATA 2965792 Query 75961 TGTTTCGTAAGTCCCGTCCTTTTCAGCTAGTTCGCAACTCGCCTCTAACGCACCGTAATA 76020 ||| ||| || || ||| || ||||||||||| || ||||| || |||||||| Sbjct 2965793 TGTACTATAAACTCCTTCTCTTTGCGCCAGTTCGCAACTGGCTTCTAATGCTCCGTAATA 2965852 Query 76021 AATTGTTTCGAAAATCTTCTTATTAAGAT--CTTGCGCTTCAAGACTATCAAAAGGATAA 76078 || |||||||| || | | ||||| | |||| ||| ||| ||| ||||| Sbjct 2965853 TATCGTTTCGAAGATTTGTTGGTTAAGTTTAATTGC-CTT-GTCACTTTCATAAGGAATG 2965910 Query 76079 TGTAAAAGAATAAATGCATCTGCTAGTCCCTGAACTCCAATACCAATAGGTCTATGTCTC 76138 | | |||| ||||| ||| |||| || || |||||||| ||||| ||||| || | | Sbjct 2965911 CGCATCAGAACAAATGTATCAGCTAACCCTTGCACTCCAATCCCAATTGGTCTGTGGCGC 2965970 Query 76139 TTATTGGAAATTTCAGCTTCTGGAATAGGGTAATAATTAATATCTATAATTTTATTGAGA 76198 | |||||| | | |||||||| | |||||| |||||| ||| ||||||||||| || Sbjct 2965971 ATGTTGGAATTCTTTGCTTCTGGCACTGGGTAAAAATTAACATCAATAATTTTATTAAGG 2966030 Query 76199 TTTCTGACAACTACTTTAACCACGTC-CTTTAGTTTGAGAAAATCAAATTTTCCATCT-- 76255 ||| | || || || || || | |||| ||| | || || |||| Sbjct 2966031 TTTTGTGTGATTATCTTTGTGACTTCTCTCAACTTTG-TAAAGTTGTATGTTTTATCTTC 2966089 Query 76256 -ATCACAAACATATTAAGAGCTATAGATGCTAGATTACAAACGGCTACCTCATTAGCATT 76314 | |||||| | || | ||| ||||| |||| ||||||||| || || |||| || Sbjct 2966090 ATTAACAAACCTGTTCAAAGCAATAGAAGCTAAATTACAAACAGCAACTTCATCTGCTGA 2966149 Query 76315 GGCATATTGTATTATCTCCGTGCATAGATTACTACACTTGATAGTTCCAAGATTTTGTTG 76374 | |||| | || || ||||| | |||||| || || || || |||||||||| ||| Sbjct 2966150 AGTGTATTCAACAATTTCTGTGCACAAATTACTGCATTTAATGGTGCCAAGATTTTTTTG 2966209 Query 76375 GTTGCTCTTTTTGTTACATGAGTCCTTATAAAGAACAAACGGAGTTCCAGTTTCAATCTG 76434 ||||| ||| ||||||| || || ||||| | | | | || || || ||||| | || Sbjct 2966210 ATTGCTTTTTCTGTTACAAGAATCTTTATATAACATATATGGTGTGCCTGTTTCCACTTG 2966269 Query 76435 TGATTCGATAATAGATTTCCAGACGACTCTAGCT-----TTTATTATAGATTTGTATCGC 76489 || ||| || || | |||||| | || |||| || ||| | | ||| | Sbjct 2966270 TGCTTCTATGATTGCTTTCCACAGTTCTTGAGCTCGGACTTGCTTA-ACA----AATCTC 2966324 Query 76490 TTCTCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAA 76549 || || ||||||||| |||||| ||||||||| ||||||||| || | | | Sbjct 2966325 TTTTCCTCTTCATATTGCCCATATAATGCTTCAAATTCTTCTCCCCAACAGTCGGCAAGA 2966384 Query 76550 CCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATA 76609 || || || |||| || ||||| || |||| |||||| | ||| || |||||| Sbjct 2966385 CCGGGGCAATCATGAGGGCACATTAAACTCCACATTTCATCTTTTTCAACACGCTTCATA 2966444 Query 76610 AAGAGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCT 76669 || | ||| || ||||||| ||| |||||| |||| || ||| |||||| || || Sbjct 2966445 AACAAATCTGGGATCCATAATGCATAAAATAGTTCTCTGGCTCTGACTTCTTCTTTGCCA 2966504 Query 76670 GTATTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATC 76729 ||||||||||| ||||||| ||||| | | |||||| ||||| ||||||| || || Sbjct 2966505 GTATTCTTTTTCAGATCTAAAAACTCAAACACATCAGAGTGCCAGGGTTCTAAGTAAATA 2966564 Query 76730 GCCATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAA 76789 || | |||| |||||||| || ||||| || || | ||| || || || ||||| || Sbjct 2966565 GCAAATGCACCTGGTCGTTTGTTGCCTCCTTGGTCAACATACCTTGCTGTATTATTGTAC 2966624 Query 76790 ACTCTCAACATTGGAATAATGCCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCA 76849 |||| ||||||||| | || || || ||| ||| || || || | |||||| | || Sbjct 2966625 ACTCGCAACATTGGTACAAGACCATTGGATACACCGTTAGTACCTGCTATATAAGTACCT 2966684 Query 76850 CATGCACGAATATTACTAATAGATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCA 76909 ||| | |||| | || | ||| || || || || || ||| ||||||| ||| Sbjct 2966685 TTTGCTCTAATACAATGAACATGTAGTCCAATGCCACCAGCTGATTTTGAGATTAATGCA 2966744 Query 76910 CAGCGTTTCAATGTGTCATAGATGCCCTCTATACTATCATCCATCAT-GTTAAGAAGAAA 76968 || |||| | ||||||||| || || || || || ||||| |||| | || | || || Sbjct 2966745 CATTGTTTTAGTGTGTCATATATACCTTCAATGCTGTCATCTTTCATAGCTATG-AGGAA 2966803 Query 76969 ACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGT 77028 || ||||| ||| | |||| ||||| || ||||| ||| ||||| || Sbjct 2966804 GCAAGAAGACAATTGTGGTCTCGGAGTTGCTGCAGAGAATAATGTGGGACTGGCATGTGT 2966863 Query 77029 GAACCATTTTTCAGAAAGTAGATTGTATGTTTCAATAACTGCTTCTATATCCCATTGATG 77088 || |||||||||| | || ||||| |||||||| ||| || || || ||| Sbjct 2966864 AAAGTATTTTTCAGACAATAAGTTGTAGGTTTCAATGGCTGAATCAATGTCTTCACCATG 2966923 Query 77089 AATTCCTACAGCGACACGCATCAACATATGCTGAGGTCGTTCTACAGTCT 77138 ||||| | | ||| ||||||| ||||||||| |||| ||| || ||| Sbjct 2966924 GATTCCAATTGAGACCCGCATCAGCATATGCTGGGGTCTTTCAGCAATCT 2966973 Score = 91.5 bits (100), Expect = 2e-13 Identities = 102/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 77341 AAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGC 77400 |||| |||| || ||||| ||||||| ||| |||| |||| |||||||||||| | || Sbjct 2967855 AAAT-GTTTCTTGGTTTCTTTGTGTAAATTAGATATAGCTAATCTAGCAGCTAGTACAGC 2967913 Query 77401 ATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTC 77460 || || ||||| | ||| || ||||| || ||||||| |||||| | || ||||| Sbjct 2967914 GTAATCTGGATGATCTGTTGTCATAGTGGCAGCAGTTTCTGCAGCTAAATTGTCCAATTC 2967973 Query 77461 TATAGTAGTAACTCC 77475 | ||| || ||||| Sbjct 2967974 CACAGTTGTTACTCC 2967988 >seq348 Length=4065129 Score = 109 bits (120), Expect = 8e-19 Identities = 137/186 (74%), Gaps = 4/186 (2%) Strand=Plus/Minus Query 46891 TCTTTAACATATGTATCTATTA--AAAGACTATACATTTCTGAATGAATGTTTTCAATAG 46948 ||| | | ||| |||||||| | || || |||||| || || || | || || |||| Sbjct 3297244 TCTCTGATATAAGTATCTATCAGCAATGA--ATACATCTCAGAGTGTACATTCTCCATAG 3297187 Query 46949 CCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTT 47008 | || || ||||||||||| | ||||||||| ||| || || ||| ||||||| | Sbjct 3297186 CAATTTGGAATCCGTAAAAGAACCTTGCTTCACCAATTTGAACTTCTTGTGAAAATCGCT 3297127 Query 47009 CAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAA 47068 | || ||| ||||| || || ||||| ||||||||||| ||||| |||||||| | Sbjct 3297126 CTACCAGATTTTCATTAACAATACCATCGGAGGCAGCAAAAAACGCCAAGACATGTTTTA 3297067 Query 47069 TAAAAT 47074 |||||| Sbjct 3297066 TAAAAT 3297061 Score = 95.1 bits (104), Expect = 2e-14 Identities = 153/218 (70%), Gaps = 3/218 (1%) Strand=Plus/Minus Query 46654 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTG 46713 ||||| ||| ||| | ||| || || || | || ||||| | |||||||| || Sbjct 3297631 TCATCCCTAGAAATCAGTTCATTGCTGAAGGTCAAACCGGGCATCAAGCCACGCTTCTTC 3297572 Query 46714 AGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCG 46773 | ||| ||||| | || ||| ||| |||||||| ||||||||||||||||| ||||| Sbjct 3297571 AACCAGAATATTGATGCAAAACTTCCGGAAAAGAAGATGCCTTCTACAGCCGCAAATGCA 3297512 Query 46774 ACAAGTCTCTCTCCGTAACTGGC-ATCATTATG--AATCCACCTTTGAGCCCAATCAGCC 46830 || | |||||||| | | || || | || ||||| | ||||| || ||| Sbjct 3297511 ACTATCCTCTCTCCAAAGTTTGCTGTCTTGCTGGCGATCCATTGTAATGCCCAGTCTGCC 3297452 Query 46831 TTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 46868 ||||| || |||||||| | || || || ||||| || Sbjct 3297451 TTTTTTTTCACACAAGGTAAAGTCTCAATGGCATTGAA 3297414 Score = 86.0 bits (94), Expect = 9e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 47116 TTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTC 47175 || |||| ||| ||||| || ||||||||||||| || ||||| ||||| ||||| | | Sbjct 3296936 TTGGATAGATCAACTTCCTCCACTGTCCAGAATGAAGCTTCTGCCTTTTTGTACATTTGC 3296877 Query 47176 CATATATCACGATATTGGATCGGAAAAATAACAAA 47210 || |||||| |||||||||| || || || || || Sbjct 3296876 CAGATATCAGGATATTGGATGGGGAAGATGACGAA 3296842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712899876151680