Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq1964 125 2e-23 seq593 114 3e-20 seq2316 113 1e-19 seq802 89.7 1e-12 >seq1964 Length=1360 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || | ||||||||||||||| || ||||||||||| |||| | || | ||||| Sbjct 259 AGCACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTACGACCATCC 200 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || | || ||||| ||||| || | |||||||| | | ||| |||||||| ||| Sbjct 199 TCCAACTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCT 140 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || ||| |||| | | |||| || || ||||| || || || ||| Sbjct 139 TGGATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGTTCAACTTCTAGGGTGATTGTT 80 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| || |||||||| ||||||| |||||| Sbjct 79 TTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 48 >seq593 Length=2014934 Score = 114 bits (126), Expect = 3e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || || | ||| || | ||||||||||| ||||| |||||||||||||| | || || Sbjct 755379 CTAAGACGGAGCACTAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAATCTGACAATGTG 755438 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | |||||||| || ||| || || ||||| | ||||||||||| | | || ||| Sbjct 755439 CGTCCATCTTCAAGCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGAATGCCT 755498 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || ||||| ||||| || ||| | || | |||| || ||| || || | Sbjct 755499 TCTTTGTCTTGGATTTTAGCCTTAACATTTTCAATTGTGTCAGATGGCTCAACCTCTAAT 755558 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || ||||| ||||| || | ||||| ||||||| |||||| Sbjct 755559 GTGATAGTCTTGCCTGTCAAGGTCTTAACGAAGATCTGCAT 755599 Score = 113 bits (124), Expect = 1e-19 Identities = 158/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||| | ||| || | ||| || || || || ||||||||||| || |||| || || | Sbjct 755609 GAGACGGAGTACTAAATGCAGGGTGGATTCCTTTTGGATGTTATAGTCGGACAATGTGCG 755668 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 |||||||| | ||| ||||||||||| || | ||||||||| | | || || || Sbjct 755669 TCCATCTTCCAACTGTTTACCGGCGAAGATGAGACGCTGCTGGTCTGGGGGAATGCCCTC 755728 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| ||||| || ||| || ||| |||| | |||||||| ||| || || | || Sbjct 755729 CTTGTCTTGGATCTTTGCCTTAACATTCTCAATTGTGTCTGAAGGCTCCACCTCCAAGGT 755788 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || ||||| || | |||||||| || | |||||| || Sbjct 755789 GATGGTCTTGCCTGTCAATGTCTTCACAAAAATCTGCATCTT 755830 Score = 102 bits (112), Expect = 2e-16 Identities = 148/208 (71%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || || |||||||||||||| || | | || | ||||| |||| Sbjct 754937 CAAG-TGAAGTGTTGATTCCTTTTGGATGTTGTAGTCAGAAAGGGTACGGCCATCCTCTA 754995 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| || || ||||| | ||||||||||| | | ||| ||||| || || || | Sbjct 754996 GCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGGGGGGATACCTTCTTTATCCTGGA 755055 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || ||||||| |||| | | | || ||| || || || | || || || |||| Sbjct 755056 TCTTGGCTTTGACATTCTCAATGGTATCAGAAGGTTCAACCTCCAAGGTGATGGTCTTGC 755115 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || | |||||||||||| | ||||| Sbjct 755116 CTGTCAAAGTCTTCACGAAAATTTGCAT 755143 Score = 100 bits (110), Expect = 7e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 151917 TTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATA 151976 |||||||||||||| || | | || | ||||| ||||| ||| || || ||||| Sbjct 754728 TTTTGGATGTTGTAGTCAGAAAGGGTACGGCCATCCTCTAGCTGTTTGCCAGCAAAGATC 754787 Query 151977 AGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCT 152036 | ||||||||||| | | ||| |||||||| ||||| || || || ||| |||| Sbjct 754788 AATCTCTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCG 754847 Query 152037 ACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAG 152096 | | |||| || |||||||| | || ||||| ||||| || || || || || ||| Sbjct 754848 ATGGTGTCCGAGGGTTCTACTTCTAATGTGATAGTCTTGCCTGTCAGGGTTTTAACAAAG 754907 Query 152097 ACCTGCAT 152104 | |||||| Sbjct 754908 ATCTGCAT 754915 Score = 89.7 bits (98), Expect = 1e-12 Identities = 146/209 (70%), Gaps = 1/209 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || || ||||| || ||||| || | | || | |||||||| | Sbjct 755165 CAAG-TGAAGCGTCGATTCCTTTTGAATATTGTAGTCTGAAAGTGTGCGACCATCTTCGA 755223 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | || || || |||||||| | ||||| || | | || || ||||| ||||||| Sbjct 755224 GCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCCTCCTTGTCTTGAA 755283 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| ||| ||| |||| | ||||||| ||| || || || || ||||| || | Sbjct 755284 TTTTCGCTTTTACATTCTCAATTGTGTCTGATGGCTCCACCTCCAGTGTGATAGTCTTTC 755343 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 | || || || || || || | ||||||| Sbjct 755344 CTGTTAGCGTTTTAACAAAAATCTGCATT 755372 >seq2316 Length=6356476 Score = 113 bits (124), Expect = 1e-19 Identities = 151/209 (72%), Gaps = 1/209 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| ||||| || || || || ||||||||||| |||| || || | |||||||||| Sbjct 2659551 CAAG-TGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGACAATGTACGTCCATCTTCTA 2659493 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 ||| ||||||||||| | ||| ||||| || | | || || || || ||||||| Sbjct 2659492 ACTGTTTGCCGGCGAAGATCAACCTTTGCTGATCTGGGGGAATGCCCTCTTTGTCTTGAA 2659433 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 |||| ||| ||| | || | |||| || || || || | || || ||||| | Sbjct 2659432 TTTTCGCTTTTACATTTTCAATAGTGTCAGAGGCTTCAACCTCTAACGTTATGGTTTTAC 2659373 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATT 152105 ||||||| || || ||||||| ||||||| Sbjct 2659372 CCGTGAGGGTTTTTACGAAGATCTGCATT 2659344 >seq802 Length=1346568 Score = 89.7 bits (98), Expect = 1e-12 Identities = 97/129 (75%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 151979 CCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTAC 152038 |||||||||||| | | |||||| || || |||||||||||| ||||||| | || | Sbjct 833166 CCTCTGCTGGTCTGGAGGGATTCCCTCTTTGTCTTGAATTTTTGCTTTGACATTTTCAAT 833225 Query 152039 GCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGAC 152098 | | || || || || || || || || ||||| |||||||| || |||||||| | Sbjct 833226 GGTATCCGAGGGTTCAACCTCGAGGGTGATGGTTTTCCCCGTGAGGGTTTTCACGAAAAT 833285 Query 152099 CTGCATTTT 152107 |||||| || Sbjct 833286 CTGCATCTT 833294 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153763529383454