Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq348 114 1e-20 >seq348 Length=4065129 Score = 114 bits (126), Expect = 1e-20 Identities = 151/208 (73%), Gaps = 1/208 (0%) Strand=Plus/Minus Query 23762 TTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACATTTCAGAATGAATAT 23821 |||||| | ||| | ||||| ||||| || || || |||||| ||||| || | || Sbjct 3297255 TTTCTTTAGGGTCTCTGATATAAGTATCTATCAGCAATGAATACATCTCAGAGTGTACAT 3297196 Query 23822 TTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACAATTGAACATCATTAA 23881 | || |||||||| || || || ||||| | || |||||| | |||||| || | Sbjct 3297195 TCTCCATAGCAATTTGGAATCCGTAAAAGAACCTTGCTTCACCAATTTGAACTTCTTGTG 3297136 Query 23882 AAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAA 23941 |||||| | | | |||||| |||||||||||||| |||||||| || || | | Sbjct 3297135 AAAATCGCTCTACCAGATTTTCATTAACAATACCATCGGAGGCAGCAAAAAACGCCAAGA 3297076 Query 23942 CATATTTTATAAAATGTCTTTCATCAGT 23969 ||| |||||||||||| || ||| |||| Sbjct 3297075 CATGTTTTATAAAATGCCTCTCA-CAGT 3297049 Score = 86.0 bits (94), Expect = 7e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 23533 TCATCCCTACTAATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTA 23592 ||||||||| ||||| |||||| || || || || ||||| || || || || || Sbjct 3297631 TCATCCCTAGAAATCAGTTCATTGCTGAAGGTCAAACCGGGCATCAAGCCACGCTTCTTC 3297572 Query 23593 ATCCAAAATATTGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCC 23652 | ||| ||||||| ||||| |||||||||||| || || || ||||||||||| || Sbjct 3297571 AACCAGAATATTGATGCAAAACTTCCGGAAAAGAAGATGCCTTCTACAGCCGCAAATGCA 3297512 Query 23653 AC 23654 || Sbjct 3297511 AC 3297510 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521462746943600