Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq3650 268 7e-67 seq1964 125 5e-24 seq2316 120 2e-22 seq593 116 3e-21 >seq3650 Length=1334389 Score = 268 bits (296), Expect = 7e-67 Identities = 645/969 (67%), Gaps = 23/969 (2%) Strand=Plus/Plus Query 5956 TAGTCCACGACACCGTTTTCCCAGGAACCCTTTACGGGACCCGTGGCAGTGCCTGTGAAG 6015 ||||| || ||||||| || ||| | ||| || || || || || || |||| ||||| Sbjct 960558 TAGTCAACTACACCGTCTTGCCAAGTACCTTTGACTGGTCCAGTCGCGTTGCCAGTGAAT 960617 Query 6016 GGATTGTTGT--TGGTGATGTTGTGGATTCCACGCCATCCCCTGCCGTACATGGCCACGC 6073 |||||||||| | || || | || | ||| ||| || | |||||||| || |||| Sbjct 960618 GGATTGTTGTCTTCGTAAT--TATGAACACCAGTCCAGCCGCGTCCGTACATAGCTACGC 960675 Query 6074 CCACCACCAATTTGTTTGGGTTCACGCTCTGATTGAGCAGGCGTTGGACGGCGAACGCGG 6133 ||||||| | || || |||||||||| ||| |||| || || | || | | Sbjct 960676 CCACCACAATCTTCTTAGGGTTCACGCCTTGAGCAAGCAAATATTTCACACCAAAGTCAG 960735 Query 6134 TGGTGTACTTTTCGGTGGGGTTCCATGTGGGCGCGTACAGGGGCGTCTGCAGTCCCAGAT 6193 |||| || |||| | |||||||| | ||| ||||| || || ||||| | || || Sbjct 960736 TGGTATAAGTTTCCTTAGGGTTCCAAGCGGGTGCGTAAAGTGGAGTCTGATGACCGAGGG 960795 Query 6194 CGGTGTTAGACCAGGCTCCCTTGAAATCGTACGTCATGACGAAAATATGATCCAGATACT 6253 | |||||||||||| || || ||||| || |||| | ||| ||||| |||| ||||| Sbjct 960796 TGTCGTTAGACCAGGCGCCTTTAAAATCATAACTCATAAGGAAGATATGGTCCATATACT 960855 Query 6254 CCTGCACCGCACCGTATTCTACAACGTTTATTTTGTCGTAGCCCCCGCTGATGGCGCTTG 6313 || | ||| ||| || ||||| | || || || | || | ||||| ||| | Sbjct 960856 TTTGAGCTTCACTGTAATCGACAACTTGGATCTTATCCCATCCAGCACTGATAGCGGAGG 960915 Query 6314 TGAGCAGATACTTGCGACCCGTGCGAGTCTCCAGAC----CGTCCAGCATGGACCTGAGG 6369 | ||| || || ||| || ||| |||| ||| || ||| | | Sbjct 960916 TCAGCTCGTATTTCTTACCGGTC----TCTTCAGAAAGGTCGTTCAACATTTCACGCAAT 960971 Query 6370 TCGCCCAAGAGCGCTTGATAGGTGACGCCGTCGACTGTGACGTTTCCTAAGGCAGGATTG 6429 || || | || | | || | || || | | | || | | | || || Sbjct 960972 TCCTTCATTAA---TTCAACGTAAACATCTCCGTCTTTCGGGCTACCGAGGTCGGGGTTA 961028 Query 6430 GCTCCCTTGCCTCCGGGAAATTCCCAATCTATGTCCACGCCGTCGAAGAACTTCCAAGTT 6489 |||||||| ||||| || ||||||||||| ||||| || || |||||||||||||| || Sbjct 961029 GCTCCCTTACCTCCAGGGAATTCCCAATCGATGTCAACACCATCGAAGAACTTCCAGGTC 961088 Query 6490 TCCAGAAATTCTTCGACGCTCTCTACGAACACCTTTCTTTTAATCGTGTCGTTGAGCTGG 6549 || || |||| || || ||||| | ||| || | ||||| ||| | Sbjct 961089 AAGAGGAAATCTTTTACAGAATCAACGAAGCGATCTCTCTTCTCCTTGTCGGTGAAGAAG 961148 Query 6550 TAAAAGGGATCGCTCAGCGTCCACCCACCGATCGAGGGCAGGATGGTCAGATGCGGATTG 6609 | ||||||||| || ||||| |||||||| || || ||||| | || | || || Sbjct 961149 AAGAAGGGATCGGCTAGTGTCCAACCACCGATGGAAGGTAGGATCTTAAGTTCAGGCCTG 961208 Query 6610 TGTTTTCGTATGGCCATAAGCTGACCGAAATTACCCTTGTACATTTC---CGAGTAGGCC 6666 || | | | ||| ||||| || || || || ||||| ||| | || | | | Sbjct 961209 GCTTGTTTGAGAGACATCAGCTGGCCAAAGTTGCCTTTGTAAGGTTCGTTCCAGGAAGAC 961268 Query 6667 TCGACGCCCTTCTGGGGTTTTTGTAGTGCGCCCCATATATCGTGTATGGACACCTTGAAG 6726 | |||||||| ||||| || || ||| |||| |||||| || || || ||||| Sbjct 961269 ---AATCCCTTCTGTGGTTTCTGAAGAGCGGCCCAAGGATCGTGAATAGATACTTTGAAA 961325 Query 6727 TCGTCTCGTCCCTCGCACGATCGCTGCAGAGCTTCGAACGAGCCCGGCACCTGTTTCAGA 6786 || ||||| || |||||||| ||| ||||||| ||| ||| | || ||| | | Sbjct 961326 TCTTCTCGGCCGCTGCACGATCTCTGAAGAGCTTGGAAACTGCCTTCGATCTCTTTTA-A 961384 Query 6787 GC-GTCGTTGATACCATCCCCTCCGCACATGGGCACGAATCCGTACAGCAGATGTGTGAG 6845 || ||||||||| ||||| || ||||| || || | ||| ||||| || | ||| || || Sbjct 961385 GCTGTCGTTGATGCCATCTCCACCGCAAATTGGAATGAAGCCGTATAGTAAATGAGTCAG 961444 Query 6846 ATTGGGAATGGGGATTCTGTCGGCGGGAAACTGTCTGTCGTAAACACCCCACTCCACGAA 6905 || ||||| || | | ||| | || || | ||| ||| |||||||| || ||||| Sbjct 961445 GTTAGGAATTGGAACACGATCGACTGGGAATTTTCTCGGGTACACACCCCATTCTACGAA 961504 Query 6906 GTAAGCTCC 6914 ||| ||||| Sbjct 961505 GTATGCTCC 961513 >seq1964 Length=1360 Score = 125 bits (138), Expect = 5e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44128 CACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTC 44187 ||||| ||||| || |||||| ||||||||||| |||| |||| || | || || Sbjct 257 CACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGTGTACGACCATCCTC 198 Query 44188 CAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGT 44247 || |||||| ||||||||||| | ||| ||||| |||| ||| | ||||||||| || Sbjct 197 CAACTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTG 138 Query 44248 TATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCT 44306 ||||| || | || ||| | |||||||| | || ||| || || | || || || | Sbjct 137 GATCTT-GGCCTTAACATTCTCGATGGTGTCCGAGGGTTCAACTTCTAGGGTGATTGTTT 79 Query 44307 TTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 | || || || ||||| |||||||| ||||| Sbjct 78 TGCCAGTCAGAGTCTTGACGAAGATCTGCAT 48 >seq2316 Length=6356476 Score = 120 bits (132), Expect = 2e-22 Identities = 167/233 (72%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 44106 TCATTCCC-CCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAA 44164 ||||| || |||| ||| |||||||||| |||||| || ||||| ||||||||||| Sbjct 2659577 TCATTACCTCCTCGCAGCCTCAACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAG 2659518 Query 44165 TCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCT 44224 |||| | | || | || || | ||| || ||||| |||||||| | ||||||||| Sbjct 2659517 TCGGACAATGTACGTCCATCTTCTAACTGTTTGCCGGCGAAGATCAACCTTTGCTGATCT 2659458 Query 44225 GAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGAT 44284 | || | || || || || || ||| || | || | || ||||| | || | Sbjct 2659457 GGGGGAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCAATAGTGTCAGAGGCT 2659398 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 || ||||| | ||| || || || ||||||||||| || |||||||| ||||| Sbjct 2659397 TCAACCTCTAACGTTATGGTTTTACCCGTGAGGGTTTTTACGAAGATCTGCAT 2659345 >seq593 Length=2014934 Score = 116 bits (128), Expect = 3e-21 Identities = 167/233 (72%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || |||| ||| | | |||| |||||| || ||||||||||||||||| || Sbjct 754913 CATACCACCTCGCAGACGGAGTACCAAGTGAAGTGTTGATTCCTTTTGGATGTTGTAGTC 754972 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | || || | || || ||||| || || ||||||||||| | |||||| |||| Sbjct 754973 AGAAAGGGTACGGCCATCCTCTAGCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGG 755032 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 || | |||||| || ||| ||||| |||| | ||| | ||||| || | | || Sbjct 755033 GGGGATACCTTCTTTATCCTGGATCTT-GGCTTTGACATTCTCAATGGTATCAGAAGGTT 755091 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 | ||||||| || || ||||| || || | ||||||||||| ||||||||| Sbjct 755092 CAACCTCCAAGGTGATGGTCTTGCCTGTCAAAGTCTTCACGAAAATTTGCATG 755144 Score = 102 bits (112), Expect = 6e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 44147 TCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAG 44206 |||||||||||||| || |||| | | ||| | || |||| ||| || ||||| ||| Sbjct 755637 TCCTTTTGGATGTTATAGTCGGACAATGTGCGTCCATCTTCCAACTGTTTACCGGCGAAG 755696 Query 44207 ATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTT 44266 || | ||||||||| |||| || | || ||||| || ||||| ||| | || || Sbjct 755697 ATGAGACGCTGCTGGTCTGGGGGAATGCCCTCCTTGTCTTGGATCTT-TGCCTTAACATT 755755 Query 44267 C-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCAC 44325 | | || ||||| | | |||||||||| || || ||||| || || | |||||||| Sbjct 755756 CTCAATTGTGTCTGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCTGTCAATGTCTTCAC 755815 Query 44326 GAAGATTTGCATGATGTGAATGAAA 44350 || || ||||| ||| |||| || Sbjct 755816 AAAAATCTGCATCTTGTTAATGTAA 755840 Score = 98.7 bits (108), Expect = 7e-16 Identities = 138/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Plus Query 44148 CCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGA 44207 |||||||||||||||| || | || || | || || ||||| || || ||||||| Sbjct 754726 CCTTTTGGATGTTGTAGTCAGAAAGGGTACGGCCATCCTCTAGCTGTTTGCCAGCAAAGA 754785 Query 44208 TCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC 44267 |||| | |||||| |||| || | ||||||||| || ||||| || | || ||| Sbjct 754786 TCAATCTCTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTT-GGCCTTAACATTC 754844 Query 44268 -CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACG 44326 | |||||||| | || ||| || || | || || ||||| || || ||||| || || Sbjct 754845 TCGATGGTGTCCGAGGGTTCTACTTCTAATGTGATAGTCTTGCCTGTCAGGGTTTTAACA 754904 Query 44327 AAGATTTGCAT 44337 ||||| ||||| Sbjct 754905 AAGATCTGCAT 754915 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 |||||| ||||| || | | ||| | |||||| || || || |||||||||||||| Sbjct 755369 CATTCCTCCTCTAAGACGGAGCACTAAGTGAAGAGTAGATTCTTTCTGGATGTTGTAATC 755428 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 | | | ||| | || || ||||| || || ||||||||||| | |||||| |||| Sbjct 755429 TGACAATGTGCGTCCATCTTCAAGCTGTTTGCCAGCAAAGATCAATCTCTGCTGGTCTGG 755488 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTCCTATGGTGTCGGCGGATTC 44286 || | ||||| || || || || ||| | || | || ||||| | | || Sbjct 755489 GGGAATGCCTTCTTTGTCTTGGATTTTAGCCTTAACATTTTCAATTGTGTCAGATGGCTC 755548 Query 44287 CACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCAT 44337 ||||| | || || ||||| || || | |||||| |||||||| ||||| Sbjct 755549 AACCTCTAATGTGATAGTCTTGCCTGTCAAGGTCTTAACGAAGATCTGCAT 755599 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359973403278258