Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20polytes_20[refseq_20GCF_5F000836215.1_202015-02-02] 3,874 sequences; 227,021,014 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq593 118 1e-21 seq2316 107 2e-18 seq1964 107 2e-18 >seq593 Length=2014934 Score = 118 bits (130), Expect = 1e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | || | |||||| ||| ||||| || |||||||||||||| Sbjct 755601 CCACCACGGAGACGGAGTACTAAATGCAGGGTGGATTCCTTTTGGATGTTATAGTCGGAC 755660 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 | ||||| | || || | ||| || |||||||| || || ||||| ||||| | |||| Sbjct 755661 AATGTGCGTCCATCTTCCAACTGTTTACCGGCGAAGATGAGACGCTGCTGGTCTGGGGGA 755720 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | || ||||||||| ||| ||| ||| | | | ||||| | ||||||| Sbjct 755721 ATGCCCTCCTTGTCTTGGATCTTTGCCTTAACATTCTCAATTGTGTCTGAAGGCTCCACC 755780 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865 |||| || || || || || |||| ||||| || ||||||||||| || Sbjct 755781 TCCAAGGTGATGGTCTTGCCTGTCAATGTCTTCACAAAAATCTGCATCTT 755830 Score = 104 bits (114), Expect = 2e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || | || ||| | |||| || ||||| ||||| ||||| || ||||| || Sbjct 755144 GCCTCCTCTTAAACGAAGAACCAAGTGAAGCGTCGATTCCTTTTGAATATTGTAGTCTGA 755203 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || ||||||||||| || || || || || || || || || | ||| Sbjct 755204 AAGTGTGCGACCATCTTCGAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGG 755263 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAAC-GACGACACAGTGTCGCTCGACTCCA 41813 || || |||||||| | ||| |||| |||| || | | ||||| | ||||| Sbjct 755264 AATGCCCTCCTTGT-CTTGAATTTTCGCTTTTACATTCTCAATTGTGTCTGATGGCTCCA 755322 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| || || || || || || ||||| || || ||||||||||| Sbjct 755323 CCTCCAGTGTGATAGTCTTTCCTGTTAGCGTTTTAACAAAAATCTGCAT 755371 >seq2316 Length=6356476 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||||| || || || |||||||| ||||| |||||||| | || || | || Sbjct 2659556 AACACCAAGTGAAGTGTTGATTCCTTCTGGATGTTGTAGTCGGACAATGTACGTCCATCT 2659497 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || | ||| ||||||||||| |||| | || || || | ||||| || ||| |||| | Sbjct 2659496 TCTAACTGTTTGCCGGCGAAGATCAACCTTTGCTGATCTGGGGGAATGCCCTCTTTGT-C 2659438 Query 41771 ATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 ||| |||| |||| || | | |||||| | || ||||| | |||||| || Sbjct 2659437 TTGAATTTTCGCTTTTACATTTTCAATAGTGTCAGAGGCTTCAACCTCTAACGTTATGGT 2659378 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||||| || || |||||||| |||||||| Sbjct 2659377 TTTACCCGTGAGGGTTTTTACGAAGATCTGCAT 2659345 >seq1964 Length=1360 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 |||||||||| ||||| | ||||| ||| || || ||||||||| ||||| ||||||| Sbjct 276 CGCCGCCGCGGAGACGAAGCACCAAATGAAGAGTAGACTCCTTCTGGATGTTGTAGTCGG 217 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 |||| || || | || || | |||||||||||| || || || || || ||||| | | Sbjct 216 AGAGTGTACGACCATCCTCCAACTGCTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGAG 157 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCA 41813 | | | |||||||| ||| || ||| | | | ||||| | || | Sbjct 156 GGATACCTTCCTTGTCTTGGATCTTGGCCTTAACATTCTCGATGGTGTCCGAGGGTTCAA 97 Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | || | || || ||||| || ||||| ||||| ||||| |||||||| Sbjct 96 CTTCTAGGGTGATTGTTTTGCCAGTCAGAGTCTTGACGAAGATCTGCAT 48 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462281612928800