Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq1390 210 2e-49 seq1673 199 4e-46 seq4120 93.3 4e-14 >seq1390 Length=76047 Score = 210 bits (232), Expect = 2e-49 Identities = 562/852 (66%), Gaps = 18/852 (2%) Strand=Plus/Minus Query 16693 TTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATT 16752 ||| || || ||||| ||||| || | || || ||||| ||||||||||| |||||||| Sbjct 55065 TTTGTCAAAGAAGTTTGTTTTACCAACAAGTGAAATATTTTCCATGAAATCGAAAGGATT 55006 Query 16753 AGTAGC--TGAAAATATTTTAGAGTACCCCA--GTTCGGCGATTAATCTATCCGCTACAA 16808 | | || |||| || | | ||||| ||| | || ||||| || ||||||| Sbjct 55005 GGCTGTGTTGTAAATCTTATC---TTCCCCAAGGTTTATCAAT-AATCTGTCGGCTACAA 54950 Query 16809 ATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTT 16868 |||| ||||| | |||||| | || ||| |||||||| |||||| || || | | || Sbjct 54949 ATTCAATATAATTGCACATAAGTTTGCAATTCATTCCAATAAGATTAACAGGTAAACTTT 54890 Query 16869 CCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTTCCT 16928 | | |||||| ||| || || || || || || || | || | || | || | Sbjct 54889 CACTTAAAAATTCTTGTTCGATTTTTACTGCCTC---AACAACAATATC--CTTGATCTT 54835 Query 16929 --CGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCC 16986 || | | ||| |||||| || | || ||| || || |||||||| | || Sbjct 54834 ATCGCA---TTTATTGATAAGATAACTATTTAACAAACAAGCAAATTCGCAATGCAGACC 54778 Query 16987 CTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTT 17046 || |||| ||| || ||||| || ||||| | ||| || ||||| |||| |||||| Sbjct 54777 TTCATCTCGGCTAATGAGTTCATTTGAAAACGACAAACCAGGCATGAGACCTCTTTTCTT 54718 Query 17047 TAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGC 17106 |||||| || |||| || || | ||| |||||| || || ||||| | ||||| || Sbjct 54717 TAACCAGAAGATCGAAGCAAATGCTCCACTAAAGAAAATTCCTTCGACACAAGCAAATGC 54658 Query 17107 GATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGC 17166 ||| | || || | || | | ||||| ||||||||| |||| || || Sbjct 54657 GATAACTCTGGTAGCAAAAGTAGATTTTTTGTCTTTTATCCATTTCAATGCCCAATCAGC 54598 Query 17167 TTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAG 17226 || | || || | || || | ||| || |||| | | | |||||| | | Sbjct 54597 CTTCTTTTTAATAGATGGTATTGTGTTTATAGCATTAAGAAGATGATTTTTTTCGTCCGG 54538 Query 17227 GTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGC 17286 || | ||||||||||| || |||| |||||||| || || || || || || | Sbjct 54537 ATCACTAATATACGTATCTATAAGTAAAGAATACATTTCAGAATGGATATTTTCGATAAC 54478 Query 17287 TATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTC 17346 || ||| ||||| ||||| ||| || || || |||||| || | || | ||| Sbjct 54477 TACCTGGAATCCATAAAAACATTTTGCCTCTAAAATGGTGACTTCCTCGGAAAACCTTTC 54418 Query 17347 CGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAAT 17406 | ||||| || || || || || || |||||||| || | ||||| || Sbjct 54417 AACAAGATTCATATTTACAATACCATCAGAAGCAGCGAAAAATGCAAGAATATGTGAAAC 54358 Query 17407 GAAATATTTTTCGTCCGGTGTAAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCCAC 17466 || ||| |||| || ||||| | | | ||| || | |||||| || | ||| || Sbjct 54357 AAAGTATCTTTCATCTGGTGTTAAAGAGTTCCAATCATATAAATCGGCTGAAAGATCAAC 54298 Query 17467 TTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTGTA 17526 |||||| | |||||||||| | | || | ||| ||||| ||||| ||||| | || Sbjct 54297 TTCTTCAGCGGTCCAAAAAGAACATTCGGCTTGTTTGTACATCTTCCAGATATCGTGATA 54238 Query 17527 TTGTATGGGGAA 17538 || || ||||| Sbjct 54237 TTTAATAGGGAA 54226 >seq1673 Length=160240 Score = 199 bits (220), Expect = 4e-46 Identities = 562/854 (66%), Gaps = 22/854 (3%) Strand=Plus/Plus Query 16693 TTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCCATGAAATCAAAAGGATT 16752 ||| ||||| ||||| ||||| || | || || ||||| ||||| ||||| |||||||| Sbjct 44721 TTTGTCGAAGAAGTTTGTTTTACCAACAAGTGAAATATTTTCCATAAAATCGAAAGGATT 44780 Query 16753 AGTAGC--TGAAAATATTTTAGAGTACCCCA--GTTCGGCGATTAATCTATCCGCTACAA 16808 | | || |||| || | | | ||| ||| | || ||||| || ||||||| Sbjct 44781 GGCTGTGTTGTAAATCTTATC---TTCTCCAAGGTTTATCAAT-AATCTGTCGGCTACAA 44836 Query 16809 ATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGTACCGGAAGAGCTT 16868 |||| ||||| | |||||| | || ||| |||||||| |||||| || || | | || Sbjct 44837 ATTCAATATAATTGCACATAAGTTTGCAATTCATTCCAATAAGATTAACTGGTAAACTTT 44896 Query 16869 CCGTCAAAAATCGTTGCTCTATAACAACCGCTTCCTTAATAATACTAGCAACTCGTTCCT 16928 | | |||||| ||| || || || || || || || || | || | || | Sbjct 44897 CACTTAAAAATTCTTGTTCGATTTTTACTGCCTC---AACAACGATATC--CTTGATCTT 44951 Query 16929 --CGGACGGTGTATGTTTAAGATGTTTAAACATCAGACATGCGAAATCGCAATGTAATCC 16986 || | | ||| |||||| || | || ||| || || |||||||| | || Sbjct 44952 ATCGCA---TTTATTGATAAGATAACTATTTAACAAACAAGCAAACTCGCAATGCAGACC 45008 Query 16987 CTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTCTT 17046 || |||| ||| |||||||| || ||||| | ||| || ||||| |||| |||||| Sbjct 45009 TTCATCTCGGCTAATAAGTTCATTTGAAAACGACAAACCAGGCATGAGACCTCTTTTCTT 45068 Query 17047 TAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAACGC 17106 |||||| || |||| || || | ||| |||||| || || || || | ||||| || Sbjct 45069 TAACCAGAAGATCGAAGCAAATGCTCCACTAAAGAAAATTCCTTCAACACAAGCAAATGC 45128 Query 17107 GATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATTTCTGCACCCACTCGGC 17166 ||| | || || | || | | ||| | |||||||||| |||| || || Sbjct 45129 GATAACTCTGGTAGCAAAAGTAGATTTTTTATCTTTAATCCATTTCAAAGCCCAATCAGC 45188 Query 17167 TTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCTGTAG 17226 || | || || | || || | ||| || |||| | | | |||||| | | Sbjct 45189 CTTCTTTTTAATAGATGGTATTGTGTTTATAGCATTAAGAAGATGATTTTTTTCGTCCGG 45248 Query 17227 GTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGC 17286 || | ||||||||||| || |||| |||||||| || || || || || || | Sbjct 45249 ATCACTAATATACGTATCTATAAGTAAAGAATACATTTCAGAATGGATATTTTCGATAAC 45308 Query 17287 TATCTGAAATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTC 17346 || ||| ||||| ||||| ||| || || || |||||| || | || | ||| Sbjct 45309 TACCTGGAATCCATAAAAACATTTTGCCTCTAAAATGGTGACTTCCTCGGAAAACCTTTC 45368 Query 17347 CGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAAT 17406 | ||||| || || || || || || |||||||| || | ||||| || Sbjct 45369 AACAAGATTCATATTTACAATACCATCAGAAGCAGCGAAAAATGCAAGAATATGTGAAAC 45428 Query 17407 GAAATATTTTTCGTCCGGTGT--AAGAACGCGCCAGTCCTTTAAATCTTTGGATATATCC 17464 || ||| |||| || ||||| ||||| ||| || | |||||| || | ||| Sbjct 45429 AAAGTATCTTTCATCTGGTGTTAAAGAA--TTCCAATCATATAAATCGGCTGAAAGATCA 45486 Query 17465 ACTTCTTCGGGGGTCCAAAAACTAGCCACTGCCTTTTTATACATATTCCAAATATCATTG 17524 |||||||| | |||||||||| | | || | ||| ||||| ||||| ||||| | Sbjct 45487 ACTTCTTCAGCGGTCCAAAAAGAACATTCGGCTTGTTTGTACATCTTCCAGATATCGTGA 45546 Query 17525 TATTGTATGGGGAA 17538 |||| || ||||| Sbjct 45547 TATTTAATAGGGAA 45560 >seq4120 Length=16292344 Score = 93.3 bits (102), Expect = 4e-14 Identities = 126/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || ||||| || || | | |||||| || ||||||| |||||||| || || || Sbjct 7436411 ATGTAAGTATCAATCAGCAAGGAGTACATCTCAGAGTGTACATTCTCCATAGCAATTTGG 7436470 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 ||||| |||||| | | ||||| | ||||||||||| | ||||| || ||||| Sbjct 7436471 AATCCATAAAAGAACCTTGCTTCACCAATTTGAACTTCTTGTGAAAATCGCTCTACTAGA 7436530 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGCCAATATATGCTTAATGAA 17409 || || || || || || || || || ||||| ||||| | ||| ||||| || Sbjct 7436531 TTCTCATTAACTATACCATCAGAAGCAGCAAAAAATGCCAAAACATGTTTAATAAA 7436586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517509552948960