Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq1673 277 2e-69 seq1390 250 3e-61 seq4120 105 7e-18 >seq1673 Length=160240 Score = 277 bits (306), Expect = 2e-69 Identities = 576/851 (68%), Gaps = 15/851 (2%) Strand=Plus/Plus Query 15931 tttttCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATT 15990 ||| ||||||||||| ||||| || | | || ||||||||||||||||| || ||||| Sbjct 44721 TTTGTCGAAGAAGTTTGTTTTACCAACAAGTGAAATATTTTCCATAAAATCGAAAGGATT 44780 Query 15991 AGTAGC--TGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAAT 16048 | | || |||| |||| | || || | | | |||||| || ||||||||| Sbjct 44781 GGCTGTGTTGTAAAT--CTTATCTTCTCCAAGGTTTATCAATAATCTGTCGGCTACAAAT 44838 Query 16049 TCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTT 16108 || ||||| | ||||| | | |||||| ||||| ||||| || || | | || Sbjct 44839 TCAATATAATTGCACATAAGTTTGCAATTCATTCCAATAAGATTAACTGGTAAACTTTCA 44898 Query 16109 GTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCA 16168 ||||||||| |||||| || || || || || |||||| || || | | || Sbjct 44899 CTTAAAAATTCTTGTTCGATTTTTACTGCCTCAACAACGATATCCTTGA-TCTTATCGCA 44957 Query 16169 GACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCG 16228 | ||| | | || | || | | ||| || || |||||||| || ||||| Sbjct 44958 -----TTTATTGATAAGATAACTATTTAACAAACAAGCAAACTCGCAATGCAGACCTTCA 45012 Query 16229 TCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAAC 16288 |||| ||| |||||||| || ||||| | || || ||||| |||| |||||||||| Sbjct 45013 TCTCGGCTAATAAGTTCATTTGAAAACGACAAACCAGGCATGAGACCTCTTTTCTTTAAC 45072 Query 16289 CAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATT 16348 ||||| |||| |||||||| || |||||| || || |||||| | ||||| ||||| Sbjct 45073 CAGAAGATCGAAGCAAATGCTCCACTAAAGAAAATTCCTTCAACACAAGCAAATGCGATA 45132 Query 16349 AATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTT 16408 | || || | |||| | ||||| |||||||||| |||| || || || Sbjct 45133 ACTCTGGTAGCAAAAGTAGATTTTTTATCTTTAATCCATTTCAAAGCCCAATCAGCCTTC 45192 Query 16409 TGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCG 16468 | ||| ||| | || || | ||| || |||| | | | |||||| | ||| Sbjct 45193 TTTTTAATAGATGGTATTGTGTTTATAGCATTAAGAAGATGATTTTTTTCGTCCGGATCA 45252 Query 16469 ATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATC 16528 | ||||||||||| || |||||| |||||||| || || || || || || ||| | Sbjct 45253 CTAATATACGTATCTATAAGTAAAGAATACATTTCAGAATGGATATTTTCGATAACTACC 45312 Query 16529 TGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCC 16588 || |||||||| || ||| ||||| || |||||| || |||| | ||| | Sbjct 45313 TGGAATCCATAAAAACATTTTGCCTCTAAAATGGTGACTTCCTCGGAAAACCTTTCAACA 45372 Query 16589 AGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGC--CAATATGTGCTTAATGA 16646 || ||| ||| || ||||| ||| ||||| ||||| || |||||||| || | Sbjct 45373 AGATTCATATTTACAATACCATCAGAAGCAGCGAAAAATGCAAGAATATGTG--AAACAA 45430 Query 16647 AATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTT 16706 | ||| |||| || | ||| | | || |||||| | |||||| || | ||| |||| Sbjct 45431 AGTATCTTTCATCTGGTGTTAAAGAATTCCAATCATATAAATCGGCTGAAAGATCAACTT 45490 Query 16707 CTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATT 16766 |||| | |||||||| | | || | ||| ||||| ||||| ||||| | |||| Sbjct 45491 CTTCAGCGGTCCAAAAAGAACATTCGGCTTGTTTGTACATCTTCCAGATATCGTGATATT 45550 Query 16767 GTAT-GGGAAA 16776 || |||||| Sbjct 45551 TAATAGGGAAA 45561 >seq1390 Length=76047 Score = 250 bits (276), Expect = 3e-61 Identities = 570/851 (67%), Gaps = 15/851 (2%) Strand=Plus/Minus Query 15931 tttttCGAAGAAGTTAGTTTTTCCCTCTAAAGATATATTTTCCATAAAATCAAAGGGATT 15990 ||| || |||||||| ||||| || | | || ||||||||||| ||||| || ||||| Sbjct 55065 TTTGTCAAAGAAGTTTGTTTTACCAACAAGTGAAATATTTTCCATGAAATCGAAAGGATT 55006 Query 15991 AGTAGC--TGAAAATATCTTAGAGTACCCCAGTTCCGTAACTAATCTATCTGCTACAAAT 16048 | | || |||| |||| | ||| || | | | |||||| || ||||||||| Sbjct 55005 GGCTGTGTTGTAAAT--CTTATCTTCCCCAAGGTTTATCAATAATCTGTCGGCTACAAAT 54948 Query 16049 TCTATATATTGACACATTAAGTCGCAATTAATTCCTATAAGTCGTACCGGAAGAGCTTTT 16108 || ||||| | ||||| | | |||||| ||||| ||||| || || | | || Sbjct 54947 TCAATATAATTGCACATAAGTTTGCAATTCATTCCAATAAGATTAACAGGTAAACTTTCA 54888 Query 16109 GTTAAAAATTGTTGTTCTATCACAACCGCTTCTTTAATGATATCGGTGGCTCGTGTTTCA 16168 ||||||||| |||||| || || || || || ||||| || || | | || Sbjct 54887 CTTAAAAATTCTTGTTCGATTTTTACTGCCTCAACAACAATATCCTTGA-TCTTATCGCA 54829 Query 16169 GACGGTGTATGGTTTAGGTGTTTAAACATTAGACACGCGAAGTCGCAATGTAGTCCTTCG 16228 | ||| | | || | || | | ||| || || |||||||| || ||||| Sbjct 54828 -----TTTATTGATAAGATAACTATTTAACAAACAAGCAAATTCGCAATGCAGACCTTCA 54774 Query 16229 TCTCTGCTGATAAGTTCGTTGGAAAAAGTTAACCCTGGCATTTTTCCTCGTTTCTTTAAC 16288 |||| ||| || ||||| || ||||| | || || ||||| |||| |||||||||| Sbjct 54773 TCTCGGCTAATGAGTTCATTTGAAAACGACAAACCAGGCATGAGACCTCTTTTCTTTAAC 54714 Query 16289 CAGAATATCGCAGCAAATGACCCCGAAAAGAATATACCCTCAACAGATGCAAAAGCGATT 16348 ||||| |||| |||||||| || |||||| || || || ||| | ||||| ||||| Sbjct 54713 CAGAAGATCGAAGCAAATGCTCCACTAAAGAAAATTCCTTCGACACAAGCAAATGCGATA 54654 Query 16349 AATCGTTCCGCGTACGTAGCATCTTTATTACGAATCCATTTCTGTACCCATTCGGCTTTT 16408 | || || | |||| | ||| | ||||||||| | |||| || || || Sbjct 54653 ACTCTGGTAGCAAAAGTAGATTTTTTGTCTTTTATCCATTTCAATGCCCAATCAGCCTTC 54594 Query 16409 TGTTTTATACAATCCATCGTTTCTATGGCCTTAAACAATTTCTCTTTTTCCTGAATATCG 16468 | ||| ||| | || || | ||| || |||| | | | |||||| | ||| Sbjct 54593 TTTTTAATAGATGGTATTGTGTTTATAGCATTAAGAAGATGATTTTTTTCGTCCGGATCA 54534 Query 16469 ATTATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATC 16528 | ||||||||||| || |||||| |||||||| || || || || || || ||| | Sbjct 54533 CTAATATACGTATCTATAAGTAAAGAATACATTTCAGAATGGATATTTTCGATAACTACC 54474 Query 16529 TGAAATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCC 16588 || |||||||| || ||| ||||| || |||||| || |||| | ||| | Sbjct 54473 TGGAATCCATAAAAACATTTTGCCTCTAAAATGGTGACTTCCTCGGAAAACCTTTCAACA 54414 Query 16589 AGGTTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGC--CAATATGTGCTTAATGA 16646 || ||| ||| || ||||| ||| ||||| ||||| || |||||||| || | Sbjct 54413 AGATTCATATTTACAATACCATCAGAAGCAGCGAAAAATGCAAGAATATGTG--AAACAA 54356 Query 16647 AATATTTTTCGTCAGATGTAAGAATATGCCAATCTTTTAAATCTTTGGATATATCCACTT 16706 | ||| |||| || | ||| | | | |||||| | |||||| || | ||| |||| Sbjct 54355 AGTATCTTTCATCTGGTGTTAAAGAGTTCCAATCATATAAATCGGCTGAAAGATCAACTT 54296 Query 16707 CTTCTGGCGTCCAAAAGCTAGCCACTGCCTTTTTATACATTTTCCAAATATCATTGTATT 16766 |||| | |||||||| | | || | ||| ||||| ||||| ||||| | |||| Sbjct 54295 CTTCAGCGGTCCAAAAAGAACATTCGGCTTGTTTGTACATCTTCCAGATATCGTGATATT 54236 Query 16767 GTAT-GGGAAA 16776 || |||||| Sbjct 54235 TAATAGGGAAA 54225 >seq4120 Length=16292344 Score = 105 bits (116), Expect = 7e-18 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 16472 ATATACGTATCAATCAGTAAACTGTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGA 16531 || || ||||||||||| || |||||| || ||||||| ||||| || || || || Sbjct 7436411 ATGTAAGTATCAATCAGCAAGGAGTACATCTCAGAGTGTACATTCTCCATAGCAATTTGG 7436470 Query 16532 AATCCATAGAAGCATCGAGCCTCCGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGG 16591 |||||||| ||| | | || || | ||||| ||||| ||||||| || | || Sbjct 7436471 AATCCATAAAAGAACCTTGCTTCACCAATTTGAACTTCTTGTGAAAATCGCTCTACTAGA 7436530 Query 16592 TTCTCATTCACGATACCGTCACTTGCAGCAAAAAACGCCAATATGTGCTTAATGAA 16647 |||||||| || ||||| ||| ||||||||||| ||||| | || ||||| || Sbjct 7436531 TTCTCATTAACTATACCATCAGAAGCAGCAAAAAATGCCAAAACATGTTTAATAAA 7436586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511378779987040