Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_001350.1 Length=112930 Score E Sequences producing significant alignments: (Bits) Value seq3951 113 3e-20 >seq3951 Length=6844153 Score = 113 bits (124), Expect = 3e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 101753 GTGACATGAGCAATCATGCAAGTTAAAAGAGAATAGCTAGCAATGTTAAATGGCACTCCT 101812 |||||||| ||||||||| || ||||| |||||||| ||||||||||||||||| || Sbjct 4102017 GTGACATGTGCAATCATGTGTGTCAAAAGCGAATAGCTGGCAATGTTAAATGGCACGCCC 4102076 Query 101813 AACCCCATATCAGCTGATCTTTGATACAGTTGACAGGAAAGCTTTCCATCACAGACATAA 101872 | ||||||||| || |||||||||| | || | ||||||| | |||| Sbjct 4102077 AGCCCCATATCTGCACTCCTTTGATACATTAAGCAATTCAATTTTCCATTAGCCACATGG 4102136 Query 101873 AATTGACTTAATAC-ATGACAAGGCGGCAACACCATTTTAGGAATGTCTGAAACATTCCA 101931 || ||| || || ||||||||| || | |||||| | | ||||| |||||| Sbjct 4102137 AACTGA-ACAAGACAATGACAAGGAGGTAGAGCCATTTGACTGAGATCTGACGGATTCCA 4102195 Query 101932 AGCACACATTAACATCCTTCTATC 101955 |||||||||| |||||| || || Sbjct 4102196 TGCACACATTATCATCCTCCTGTC 4102219 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 101530 TTCTTAAACAGCCATATGCATTTTAATTATAGGGTGTGGGTTATAGTTTTCTAATATAAT 101589 || ||| |||||||| | ||||| |||| |||| || || ||||| |||| || |||| Sbjct 4101328 TTGTTATACAGCCATTTCCATTTCAATTTTAGGATGGGGATTATAATTTTTTATGATAAA 4101387 Query 101590 GTCATCTGCTTTAAAGTCATCAATGCATGAAACATTTCTAGCAAATCTAAGTGTTGGAAA 101649 ||| || ||| || || ||||| | ||| || | ||||||| ||||||||||| Sbjct 4101388 GTCTTCATATTTGAAATCGTCAATTGTTTCAACTTTCCGAGCAAATTCCAGTGTTGGAAA 4101447 Query 101650 CGGTCTAGGAGTTCGCGTCAACTGCATTTTAAGAGCATCAATGTGATCTACATAGATGTG 101709 ||| | || ||| | || ||| | | | | ||||| |||| || ||| | || Sbjct 4101448 TGGTTTTGGTTTTCTCTCTAATTGCTTCTGTAATGGTTCAATATGATTTAAATATACATG 4101507 Query 101710 AGCATCTCCTATAGTATGGATAAACTCTCC 101739 || ||| ||| | || || | |||||| || Sbjct 4101508 AGTATCACCTGTCGTGTGTACAAACTCACC 4101537 Score = 89.7 bits (98), Expect = 4e-13 Identities = 126/177 (71%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 102089 CCTTCATCTCTGTCATAAAAACCAAGTTTATCTAAAAATGATCTAGATCCATTCGCATCC 102148 || || ||||||||| ||||| | ||||| | ||||| ||| || ||||| |||||| Sbjct 4102799 CCCTCCTCTCTGTCAGTGAAACCTAAATTATCAAGAAATGCTCTGGAGCCATTAGCATCC 4102858 Query 102149 CAAATGTGCACGCCAGCTGCTGATAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCAC 102208 |||||||| || || | | || ||||||| || || || || || | |||| Sbjct 4102859 CAAATGTGAACTCCTTTTTGGGCAAGAACTTTGCTATCTGTTGAACCAGATATCATCCAC 4102918 Query 102209 AACAGTTCTTCAACAACACCTCTCCAAAATACTCTCTTAGTAGTTAAAAGTGGAAAT 102265 | | ||||||| ||||| || ||| ||||| ||||| ||||| ||||| ||| Sbjct 4102919 AGTAACTCTTCAATTACACCCCTTGTAAACACTCTTTTAGTTGTTAATAGTGGTAAT 4102975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 361226667882572