Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq3133 260 1e-64 seq2310 105 6e-18 seq1114 96.9 3e-15 seq5346 93.3 4e-14 seq2115 93.3 4e-14 >seq3133 Length=7630298 Score = 260 bits (288), Expect = 1e-64 Identities = 655/984 (67%), Gaps = 35/984 (4%) Strand=Plus/Minus Query 105529 TAATCTACAACACCGTCCTCCCACGTGCCC--GAC----CCCGGCCCGTTGCCAGTGCCG 105582 ||||| || |||||||| | ||| || || ||| || | | ||||||| ||| | Sbjct 1022572 TAATCAACTACACCGTCTTGCCAAGTACCTTTGACAGGTCCTGTCGCGTTGCCTGTGAAG 1022513 Query 105583 GAAAAATAGTTGTCATTCGTATAATTTGTTACGCCGGTCCAGCCGCGGCCGTACATGGCG 105642 | | || | || |||||| ||| || |||||||||||||| |||||||| || Sbjct 1022512 GGATTAT---TATC-TTCGTA--ATTGTGGACACCGGTCCAGCCGCGTCCGTACATAGCT 1022459 Query 105643 ACGCCCACAATTATTTTGTTGGGATCGACGCCTTGTTTCAGTAACGCATCGACAGCGTAG 105702 || ||||| | || || || || | ||| ||||| || || | ||| | || Sbjct 1022458 ACACCCACCACAATCTTCTTAGGGTTGACACCTTGAGCAAGCAAATATTTCACACCAAAG 1022399 Query 105703 TGTGTAGTGTATAGCTCTTCCGAGTTCCAACTTGGCGCGTAGACTGTTGTTTGGTAGCCC 105762 | || ||||| || | | ||||||| || ||||| | | || || | || Sbjct 1022398 TCAGTTGTGTAAGTTTCCTTAGGGTTCCAAGCGGGAGCGTAAAGCGGAGTCTGATGACCG 1022339 Query 105763 AA---ATCCGTGTTTGACCAAGCCCCTTTAAAATCGTAACTCATGAGAAATATTTTGCCT 105819 | ||| ||| ||||| || ||||| || ||||||||||| || || || | | | Sbjct 1022338 AGGGTATC---GTTAGACCAGGCGCCTTTGAAGTCGTAACTCATAAGGAAGATGTGGTCC 1022282 Query 105820 AATGACTTTTGCGCTTCGGCGTAGTTTACCACGGCAATCTTGTCGTAACCCGCGCTTATA 105879 | |||| || || || ||| | || || |||||| || | || || || ||| Sbjct 1022281 ATGTACTTCTGAGCCTCACTGTAATCGACAACTTGAATCTTATCCCATCCAGCACTAATA 1022222 Query 105880 GCGCTTGTTAATTCGTAAACCCTGCCGGTTTGCGCTTCG---AGGTCGTCTAGCATTGCG 105936 || || | ||||| | | ||||| | ||||| ||||||| | |||| | Sbjct 1022221 GCAGAGGTCAGCTCGTATTTCTTACCGGTCT---CTTCGGAAAGGTCGTTCAACATTTCA 1022165 Query 105937 CGCAGCTCCTCCAACAACAAAATGTATGTTTTGGCGTCACCGTCC--GCATCGCCCAACG 105994 |||| |||| || || || ||| | || |||||| | | |||| | Sbjct 1022164 CGCAATTCCTTCATTAATTCAACGTAAA------CATCTCCGTCCTTGGGACTGCCAAGG 1022111 Query 105995 ACGGG-TTAGCCCCTTTGCCGCCCGGAAACTCCCAATCGATGTCTACACCGTCAAAGAAT 106053 | || ||||| || || ||||| || || ||||||||||| ||||||||||| ||||| Sbjct 1022110 TCTGGATTAGCTCCCTTACCGCCAGGGAATTCCCAATCGATATCTACACCGTCGAAGAAC 1022051 Query 106054 TTCCACACTTGCAGAAATTCCTTAACCGAATCTACAAAAACGTTTCTTTTTTCAACATC- 106112 ||||| || || || || || || ||||| || || | ||| || || || Sbjct 1022050 TTCCATGTCTGAAGGAAATCTTTCACAGAATCCACGAAGCGATCTCTCTTCTCTTTGTCT 1021991 Query 106113 GTGCATAAAATAAAATGGGTCTGATAGAGTCCAGCCTCCTATTGAAGGAAGAATTTTTAA 106172 ||| | || | | || || |||| ||||||||||| || || ||||| || ||||| | Sbjct 1021990 GTGAAGAAGA-AGAAGGGATCTGCAAGAGTCCAGCCACCGATGGAAGGTAGGATTTTAAG 1021932 Query 106173 ATGGGGGTTTGCTAATTTTGCCGCCATCAACTGTCCAAAATTGCCTTTATACGGCTCGTT 106232 | || | ||| ||| | ||||| ||| ||||| |||||||| || ||||| || Sbjct 1021931 GTCAGGCCTGGCTTGTTTAAGAGACATCAGCTGACCAAAGTTGCCTTTGTATGGCTCATT 1021872 Query 106233 CCAAGCGGACACACCTTTTTGGGGTTTTTGTACGGCGGCCCACGGATCGTGAATGGCAAC 106292 ||| | || | ||| ||||| || || || | || ||||||||||||||||| | ||| Sbjct 1021871 CCAGGAAGAAAGACCCTTTTGTGGCTTCTGAAGAGCAGCCCACGGATCGTGAATTGAAAC 1021812 Query 106293 TTTGAAATCTTCGCGTCCCTTGCACGATCTTTGCAAAGATTCAAAGCTTCCGGGTATCGT 106352 ||||||||||||||| || |||| |||| ||| | || || || || || || Sbjct 1021811 TTTGAAATCTTCGCGGCCGCTGCATGATCGTTGAAGAGCTTGGAAACTGCCTTCGATTTC 1021752 Query 106353 TTTGAGGGCGTCGTTTATTCCATCGCCGCCGCAGATGGGTATGAAACCATACAACAAGTG 106412 || | |||||| || |||||||| ||||| || || || ||||| ||||| | || Sbjct 1021751 CTTCAAACTGTCGTTGATGCCATCGCCTCCGCAAATTGGAATAAAACCGTACAAAAGATG 1021692 Query 106413 TGATAAATTTGGCAAGGGAACTTTGTCTACGGGAAAGTTGCGCCCGTACACACCCCACTC 106472 | | ||| || | || || || || || || || | ||| |||||||| || Sbjct 1021691 AGTCAGATTAGGAATTGGTACACGATCAACAGGGAATTTTCTTGGGTAGACACCCCATTC 1021632 Query 106473 AACAAAGTACGCAGCGACAATTTT 106496 ||| |||||||| |||||| ||| Sbjct 1021631 AACGAAGTACGCTCCGACAACTTT 1021608 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25937 CACGGCTTTCACGTGCACGAATATGGCGACACGAGCAACGGTTGCACGTCGGCCGGTGAG 25996 ||||| || |||||||| || | ||| |||| | ||||| ||||| || || || | Sbjct 7349389 CACGGTTTCCACGTGCATGAGTTTGGTGACAACACAAACGGCTGCACATCTGCTGGGGCC 7349330 Query 25997 CACTTTAATCCCACCAATGAGGACCACGGCGCTCCCGATGCTGAAATTAGGCATGTTGGC 26056 |||||||| |||| ||| |||| |||||||||||| | || || | || |||||| Sbjct 7349329 CACTTTAACCCCAACAAGCAGGAGCACGGCGCTCCCAACGCCACCATACGCCACGTTGGC 7349270 Query 26057 GACTTGGGCAACAT 26070 ||| | |||||||| Sbjct 7349269 GACCTCGGCAACAT 7349256 >seq2310 Length=6428792 Score = 105 bits (116), Expect = 6e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | || || ||||| ||||| ||||| ||| || ||||||| || Sbjct 5746416 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTGGAACCCTCA 5746475 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || |||| |||||| || || |||||| | || ||| || Sbjct 5746476 GACACCATTGAGAATGTTAAAGCCAAAATTCAAGACAAGGAAGGTATCCCTCCAGACCAG 5746535 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 ||| | || ||||| || |||||||| || |||||| || | ||| | ||||||||| Sbjct 5746536 CAACGTCTCATCTTCGCCGGCAAACAGCTAGAAGATGGTCGTACACTCT--CCGATTACA 5746593 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 | |||||||||||||| || || ||| |||| |||| | ||||| || Sbjct 5746594 ACATTCAGAAGGAATCCACACTCCACTTGGTACTACGTCTGCGAGGTGG 5746642 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || |||| || ||||| ||||||||||| || ||| ||||||| | Sbjct 5744820 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAAACCATCACATTAGAAGTGGAACCCTCT 5744879 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || |||||| || || ||||| | ||| ||| || Sbjct 5744880 GACACAATTGAAAATGTCAAAGCAAAAATCCAAGACAAGGAAGGCATCCCCCCAGACCAG 5744939 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | |||||||| |||||||| |||||||| ||| || | || ||||| Sbjct 5744940 CAGAGATTGATCTTTGCCGGCAAACAGCTGGAAGACGGGCGAACATTGTCTGACTACAAC 5744999 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || ||||||||||| || |||||| |||| Sbjct 5745000 ATCCAGAAGGAATCCACACTTCACTTGGT 5745028 Score = 98.7 bits (108), Expect = 9e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || || | || || || || || || ||||| ||| ||| ||||||| | Sbjct 5745731 AATGCAGATCTTTGTGAAGACCTTAACAGGAAAGACCATCACCCTCGAGGTGGAACCCTC 5745790 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | || |||| || || || || |||||| | ||| ||| || Sbjct 5745791 TGACACCATCGAGAATGTTAAAGCCAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCA 5745850 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTAC 29138 ||| | || ||||| || |||||||| || |||||| || | ||| | |||||||| Sbjct 5745851 GCAACGTCTCATCTTCGCCGGCAAACAGCTAGAAGATGGTCGTACACTCT--CCGATTAC 5745908 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || |||||||||||||| || || ||| |||| |||| || ||||| || Sbjct 5745909 AACATTCAGAAGGAATCCACACTCCACTTGGTACTACGTTTGCGAGGTGG 5745958 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || |||| || ||||| ||||||||||| || ||| ||||||| | Sbjct 5745048 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAAACCATCACATTAGAAGTGGAACCCTCT 5745107 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || |||||| || || ||||| | ||| ||| || Sbjct 5745108 GACACAATTGAAAATGTCAAAGCAAAAATCCAAGACAAGGAAGGCATCCCCCCAGACCAG 5745167 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | |||||||| ||||| || |||||||| ||| || | || ||||| Sbjct 5745168 CAGAGATTGATCTTTGCCGGCAAGCAGCTGGAAGACGGACGAACATTGTCTGACTACAAC 5745227 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGT 29170 || ||||||||||| || |||||| |||| Sbjct 5745228 ATCCAGAAGGAATCCACACTTCACTTGGT 5745256 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | || || ||||| ||||||||||| || || |||||| | Sbjct 5745276 ATGCAGATTTTTGTGAAGACCTTGACAGGCAAAACCATCACATTAGAGGTTGAACCCTCG 5745335 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || |||||| || || ||||| | ||| |||||| Sbjct 5745336 GACACAATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCCCCAGATCAG 5745395 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGAT--TCCAAAACTATGGCCGATTACA 29139 ||| | |||||||||||||| || || || |||||| || | ||| | | || |||| Sbjct 5745396 CAACGTCTTATCTTTGCGGGTAAGCAGCTCGAAGATGGTCGCACACTTT--CGGACTACA 5745453 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||| || |||||||| || || ||| ||||| | || || ||||||| Sbjct 5745454 ATATCCAAAAGGAATCGACACTACACTTGGTGCTTCGTTTGAGAGGAGG 5745502 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 || ||||| || || | || || ||||||||||| ||||| ||| || ||| || Sbjct 5744589 AAGATGCAGATTTTTGTGAAGACCTTGACGGGCAAGACCATCACCTTGGAGGTGGAGCCT 5744648 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || || | | || ||||| || ||| || ||||| || | ||| ||| Sbjct 5744649 TCGGACACAATTGAAAATGTTAAGGCCAAGATTCAAGACAAAGAGGGCATCCCCCCAGAC 5744708 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 || || ||| | |||||||| |||||||| ||||||||| || || | || ||| Sbjct 5744709 CAGCAGAGATTGATCTTTGCCGGCAAACAGCTGGAAGATGGACGCACATTGTCTGACTAC 5744768 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGT 29170 || || ||||||||||| || |||||| |||| Sbjct 5744769 AACATCCAGAAGGAATCCACACTTCACTTGGT 5744800 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || | || || ||||| ||||| ||||| || || ||||| || Sbjct 5745504 ATGCAAATTTTTGTTAAGACCTTGACTGGCAAGACCATCACATTGGAGGTTGAACCTTCA 5745563 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || |||| || || ||||| |||||| | ||| ||| || Sbjct 5745564 GATACCATTGAGAATGTTAAAGCCAAGATCCAAGATAAGGAAGGTATCCCCCCAGACCAG 5745623 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATT--CCAAAACTATGGCCGATTACA 29139 ||| | || |||||||| || ||||| |||| ||| | | ||| | | ||||||| Sbjct 5745624 CAACGTCTCATCTTTGCCGGTAAACAGTTGGAGGATGGACGTACACTCT--CTGATTACA 5745681 Query 29140 ATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 | |||||||||||||| || || ||| |||| || || | ||||| || Sbjct 5745682 ACATTCAGAAGGAATCCACACTCCACTTGGTATTGCGTCTGCGAGGTGG 5745730 >seq1114 Length=8361563 Score = 96.9 bits (106), Expect = 3e-15 Identities = 163/236 (69%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 28953 AGTGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACG 29012 ||| ||| |||||| || ||| | ||||| | ||||| |||||||| || || Sbjct 2710286 AGTTTAACAATGCAGATCTTCGTAAAAACCCTTACGGGTAAAACCATAACGTTAGAGGTT 2710345 Query 29013 GAACCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCC 29072 ||| || | || || | | || | || |||||| || ||||| || | || Sbjct 2710346 GAAGCCTCTGACACTATCGAAAATGTAAAAGCGAAAATTCAAGACAAAGAGGGCATTCCA 2710405 Query 29073 GTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCC 29132 |||||| |||||| | ||||| || |||||||| |||||||| || || || Sbjct 2710406 CCAGATCAGCAAAGATTGATCTTCGCCGGCAAACAGTTGGAAGATGGACGTACATTGTCC 2710465 Query 29133 GATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||| || ||||||||||| || |||||| ||||||| | | |||||||| Sbjct 2710466 GACTACAACATCCAGAAGGAATCGACACTTCACTTGGTGTTGAGGCTTCGAGGAGG 2710521 >seq5346 Length=541963 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||||||||| | || ||| ||||| |||||||| ||||| || |||||| ||||| Sbjct 231330 GATAAAGAAGGAATCCCTCCAGACCAACAGAGACTTATATTTGCTGGTAAACAATTGGAA 231389 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || | ||| | ||||||| |||||||| || ||| ||| || || |||| ||| Sbjct 231390 GACAATAGGACTTTATCCGATTATAATATTCAAAAAGAAAGTACACTACATTTGGTTTTA 231449 Query 29175 CGATTACGAGGAGG 29188 ||||| ||||||| Sbjct 231450 AGATTAAGAGGAGG 231463 >seq2115 Length=629047 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||||||||| | || ||| ||||| |||||||| ||||| || |||||| ||||| Sbjct 360914 GATAAAGAAGGAATCCCTCCAGACCAACAGAGACTTATATTTGCTGGTAAACAATTGGAA 360855 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || | ||| | ||||||| |||||||| || ||| ||| || || |||| ||| Sbjct 360854 GACAATAGGACTTTATCCGATTATAATATTCAAAAAGAAAGTACACTACATTTGGTTTTA 360795 Query 29175 CGATTACGAGGAGG 29188 ||||| ||||||| Sbjct 360794 AGATTAAGAGGAGG 360781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428306912237660