Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_001824.1 Length=102653 Score E Sequences producing significant alignments: (Bits) Value seq1248 82.4 5e-11 seq1205 82.4 5e-11 >seq1248 Length=515940 Score = 82.4 bits (90), Expect = 5e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 12781 ATGGTCATGCGACTAGGAAAGGCATGTGGGTTAATGATTAAATCAGGTACTATGCCATCT 12840 || ||||| | |||||||| ||||| || ||||| || | |||||| ||||| || || Sbjct 297816 ATTGTCATTCTACTAGGAATAGCATGAGGATTAATAATAATATCAGGGACTATCCCTTCA 297875 Query 12841 TTAGTGAAAGGCATGTTTTCTTGGGCATAAATCATACCACAGGTACCTTTTTGTGCGGTA 12900 ||| || ||||| | |||||| | | || ||| ||| || ||||| || Sbjct 297876 GAAGTAAAGGGCATATCTTCTTGAGGGAGTGTAATCCCAATGGTCCCCTTTTGAGCATGT 297935 Query 12901 AAAGAAGCAAATTTATCTCCTATTTCAGGTATT 12933 |||||||||||||||||| |||| ||| ||| Sbjct 297936 CTAGAAGCAAATTTATCTCCCATTTGAGGGATT 297968 >seq1205 Length=221829 Score = 82.4 bits (90), Expect = 5e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 12781 ATGGTCATGCGACTAGGAAAGGCATGTGGGTTAATGATTAAATCAGGTACTATGCCATCT 12840 || ||||| | |||||||| ||||| || ||||| || | |||||| ||||| || || Sbjct 147750 ATTGTCATTCTACTAGGAATAGCATGAGGATTAATAATAATATCAGGGACTATCCCTTCA 147691 Query 12841 TTAGTGAAAGGCATGTTTTCTTGGGCATAAATCATACCACAGGTACCTTTTTGTGCGGTA 12900 ||| || ||||| | |||||| | | || ||| ||| || ||||| || Sbjct 147690 GAAGTAAAGGGCATATCTTCTTGAGGGAGTGTAATCCCAATGGTCCCCTTTTGAGCATGT 147631 Query 12901 AAAGAAGCAAATTTATCTCCTATTTCAGGTATT 12933 |||||||||||||||||| |||| ||| ||| Sbjct 147630 CTAGAAGCAAATTTATCTCCCATTTGAGGGATT 147598 Score = 82.4 bits (90), Expect = 5e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 12781 ATGGTCATGCGACTAGGAAAGGCATGTGGGTTAATGATTAAATCAGGTACTATGCCATCT 12840 || ||||| | |||||||| ||||| || ||||| || | |||||| ||||| || || Sbjct 153151 ATTGTCATTCTACTAGGAATAGCATGAGGATTAATAATAATATCAGGGACTATCCCTTCA 153092 Query 12841 TTAGTGAAAGGCATGTTTTCTTGGGCATAAATCATACCACAGGTACCTTTTTGTGCGGTA 12900 ||| || ||||| | |||||| | | || ||| ||| || ||||| || Sbjct 153091 GAAGTAAAGGGCATATCTTCTTGAGGGAGTGTAATCCCAATGGTCCCCTTTTGAGCATGT 153032 Query 12901 AAAGAAGCAAATTTATCTCCTATTTCAGGTATT 12933 |||||||||||||||||| |||| ||| ||| Sbjct 153031 CTAGAAGCAAATTTATCTCCCATTTGAGGGATT 152999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328342501156888