Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq3133 257 1e-63 seq5346 102 7e-17 seq2115 102 7e-17 seq2310 93.3 3e-14 seq1358 93.3 3e-14 >seq3133 Length=7630298 Score = 257 bits (284), Expect = 1e-63 Identities = 595/891 (67%), Gaps = 17/891 (2%) Strand=Plus/Minus Query 97380 ACGCCGGTCCAGCCGCGGCCGTACATGGCGACGCCCACAATTATTTTGTTGGGATCGACG 97439 || |||||||||||||| |||||||| || || ||||| | || || || || | ||| Sbjct 1022488 ACACCGGTCCAGCCGCGTCCGTACATAGCTACACCCACCACAATCTTCTTAGGGTTGACA 1022429 Query 97440 CCTTGTTCCAGTAACGCATCGACAGCGTAATGTGTAGTGTACAGCTCTTCCGAGTTCCAA 97499 ||||| | || || | ||| | | | || ||||| || | | ||||||| Sbjct 1022428 CCTTGAGCAAGCAAATATTTCACACCAAAGTCAGTTGTGTAAGTTTCCTTAGGGTTCCAA 1022369 Query 97500 CTTGGCGCGTAGACTGTTGTTTGGTAGCCCAA---ATCCGTGTTTGACCAAGCCCCTTTA 97556 || ||||| | | || || | || | ||| ||| ||||| || ||||| Sbjct 1022368 GCGGGAGCGTAAAGCGGAGTCTGATGACCGAGGGTATC---GTTAGACCAGGCGCCTTTG 1022312 Query 97557 AAATCGTAAGTCATGAGAAATATTTTGTCTAATGACTTTTGCGCTTCGGCGTAGTTTACC 97616 || |||||| |||| || || || | ||| | |||| || || || ||| | || Sbjct 1022311 AAGTCGTAACTCATAAGGAAGATGTGGTCCATGTACTTCTGAGCCTCACTGTAATCGACA 1022252 Query 97617 ACGGCAATCTTGTCGTAGCCCGCGCTTATAGCGCTTGTTAATTCGTAAACCCTGCCGGTT 97676 || |||||| || | || || || ||||| || | ||||| | | ||||| Sbjct 1022251 ACTTGAATCTTATCCCATCCAGCACTAATAGCAGAGGTCAGCTCGTATTTCTTACCGGTC 1022192 Query 97677 TGCACTTCG---AGGTCGTCTAGCATTTCGCGCAGCTCATCCAACAACAGAATGTATGTT 97733 | ||||| ||||||| | |||||| |||| || | || || || ||| Sbjct 1022191 T---CTTCGGAAAGGTCGTTCAACATTTCACGCAATTCCTTCATTAATTCAACGTAAACA 1022135 Query 97734 TTGGCGTCACGCTCCGCATCGCCCAGCGACGGGTTAGCCCCTTTGCCGCCCGGAAATTCC 97793 | |||| || | | ||| || || ||||| || || ||||| || |||||| Sbjct 1022134 TCTCCGTC---CTTGGGACTGCCAAGGTCTGGATTAGCTCCCTTACCGCCAGGGAATTCC 1022078 Query 97794 CAATCGACGTCGACACCATCAAAAAATTTCCACACTTGCAAAAATTCCTTAACCGACTCT 97853 ||||||| || ||||| || || || ||||| || | || || || || || || Sbjct 1022077 CAATCGATATCTACACCGTCGAAGAACTTCCATGTCTGAAGGAAATCTTTCACAGAATCC 1022018 Query 97854 ACAAAAACGTTTCTTTTTTCAACGTC-GTGCATGAAATAGAACGGGTCCGACAGAGTCCA 97912 || || | ||| || || ||| ||| | ||| |||| || || | |||||||| Sbjct 1022017 ACGAAGCGATCTCTCTTCTCTTTGTCTGTGAA-GAAGAAGAAGGGATCTGCAAGAGTCCA 1021959 Query 97913 GCCTCCTATTGAAGGAAGAATTTTTAGATGTGGGTTTGCTAATTTCGCCGCCATCAATTG 97972 ||| || || ||||| || ||||| || | || | ||| ||| | ||||| || Sbjct 1021958 GCCACCGATGGAAGGTAGGATTTTAAGGTCAGGCCTGGCTTGTTTAAGAGACATCAGCTG 1021899 Query 97973 TCCAAAATTGCCTTTGTACGGTTCGTTCCAAGCGGACACGCCCTTTTGGGGTTTTTGTAC 98032 ||||| ||||||||||| || || ||||| | || | |||||||| || || || | Sbjct 1021898 ACCAAAGTTGCCTTTGTATGGCTCATTCCAGGAAGAAAGACCCTTTTGTGGCTTCTGAAG 1021839 Query 98033 GGCGGCCCACGGATCGTGGATGGCAACTTTGAAATCTTCGCGTCCCCTGCACGATCGTTG 98092 || |||||||||||||| || | |||||||||||||||||| || ||||| |||||||| Sbjct 1021838 AGCAGCCCACGGATCGTGAATTGAAACTTTGAAATCTTCGCGGCCGCTGCATGATCGTTG 1021779 Query 98093 CAGAGCTTCAAAACTTCCGGGTATTGTTTTGAGGGCGTCGTTTATTCCATCGCCACCGCA 98152 ||||||| ||||| || ||| || | |||||| || |||||||| ||||| Sbjct 1021778 AAGAGCTTGGAAACTGCCTTCGATTTCCTTCAAACTGTCGTTGATGCCATCGCCTCCGCA 1021719 Query 98153 GATGGGTATGAAACCGTACAACAAGTGCGATAAATTTGGCAAGGGAACTTTGTCTACGGG 98212 || || || ||||||||||| | || | | ||| || | || || || || || Sbjct 1021718 AATTGGAATAAAACCGTACAAAAGATGAGTCAGATTAGGAATTGGTACACGATCAACAGG 1021659 Query 98213 AAAGCTGCGCCCGTACACACCCCACTCGACAAAGTACGCAGCGACAATTTT 98263 || | | ||| |||||||| || || |||||||| |||||| ||| Sbjct 1021658 GAATTTTCTTGGGTAGACACCCCATTCAACGAAGTACGCTCCGACAACTTT 1021608 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 22146 CACGGCTTTCACGTGCACGAATATGGCGACACGAGCAACGGTTGCACGTCGGCCGGTGAG 22205 ||||| || |||||||| || | ||| |||| | ||||| ||||| || || || | Sbjct 7349389 CACGGTTTCCACGTGCATGAGTTTGGTGACAACACAAACGGCTGCACATCTGCTGGGGCC 7349330 Query 22206 CATTTTAATCCCACCAATGAGGACCACGGCGCTCCCGATGCTGAAATTAGGCATGTTGGC 22265 || ||||| |||| ||| |||| |||||||||||| | || || | || |||||| Sbjct 7349329 CACTTTAACCCCAACAAGCAGGAGCACGGCGCTCCCAACGCCACCATACGCCACGTTGGC 7349270 Query 22266 GACTTGGGCAACAT 22279 ||| | |||||||| Sbjct 7349269 GACCTCGGCAACAT 7349256 >seq5346 Length=541963 Score = 102 bits (112), Expect = 7e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||||||||| | || ||| ||||| |||||||| ||||| || |||||||||||| Sbjct 231330 GATAAAGAAGGAATCCCTCCAGACCAACAGAGACTTATATTTGCTGGTAAACAATTGGAA 231389 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || | ||| | ||||||| ||||||||||| ||| ||| || || |||| ||| Sbjct 231390 GACAATAGGACTTTATCCGATTATAATATTCAAAAAGAAAGTACACTACATTTGGTTTTA 231449 Query 25248 CGATTACGAGGAGG 25261 ||||| ||||||| Sbjct 231450 AGATTAAGAGGAGG 231463 >seq2115 Length=629047 Score = 102 bits (112), Expect = 7e-17 Identities = 103/134 (77%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||||||||| | || ||| ||||| |||||||| ||||| || |||||||||||| Sbjct 360914 GATAAAGAAGGAATCCCTCCAGACCAACAGAGACTTATATTTGCTGGTAAACAATTGGAA 360855 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || | ||| | ||||||| ||||||||||| ||| ||| || || |||| ||| Sbjct 360854 GACAATAGGACTTTATCCGATTATAATATTCAAAAAGAAAGTACACTACATTTGGTTTTA 360795 Query 25248 CGATTACGAGGAGG 25261 ||||| ||||||| Sbjct 360794 AGATTAAGAGGAGG 360781 >seq2310 Length=6428792 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || |||| || ||||| ||||||||||| || ||| ||||||| | Sbjct 5744820 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAAACCATCACATTAGAAGTGGAACCCTCT 5744879 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || |||| |||||| || || ||||| | ||| ||| || Sbjct 5744880 GACACAATTGAAAATGTCAAAGCAAAAATCCAAGACAAGGAAGGCATCCCCCCAGACCAG 5744939 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||| | |||||||| |||||||| ||||||| ||| || | || ||||| Sbjct 5744940 CAGAGATTGATCTTTGCCGGCAAACAGCTGGAAGACGGGCGAACATTGTCTGACTACAAC 5744999 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGT 25243 || || |||||||| || |||||| |||| Sbjct 5745000 ATCCAGAAGGAATCCACACTTCACTTGGT 5745028 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || | || || ||||| ||||||||||| || || |||||| | Sbjct 5745276 ATGCAGATTTTTGTGAAGACCTTGACAGGCAAAACCATCACATTAGAGGTTGAACCCTCG 5745335 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || | || |||||| || || ||||| | ||| |||||| Sbjct 5745336 GACACAATTGAAAATGTAAAAGCCAAAATTCAAGACAAGGAAGGCATTCCCCCAGATCAG 5745395 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGAT--TCCAAAACTATGGCCGATTACA 25212 ||| | |||||||||||||| || || | |||||| || | ||| | | || |||| Sbjct 5745396 CAACGTCTTATCTTTGCGGGTAAGCAGCTCGAAGATGGTCGCACACTTTCG--GACTACA 5745453 Query 25213 ATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||| ||||||||||| || || ||| ||||| | || || ||||||| Sbjct 5745454 ATATCCAAAAGGAATCGACACTACACTTGGTGCTTCGTTTGAGAGGAGG 5745502 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || || |||| || ||||| ||||||||||| || ||| ||||||| | Sbjct 5745048 ATGCAGATCTTTGTCAAGACCTTGACTGGCAAAACCATCACATTAGAAGTGGAACCCTCT 5745107 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || |||| |||||| || || ||||| | ||| ||| || Sbjct 5745108 GACACAATTGAAAATGTCAAAGCAAAAATCCAAGACAAGGAAGGCATCCCCCCAGACCAG 5745167 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||| | |||||||| ||||| || ||||||| ||| || | || ||||| Sbjct 5745168 CAGAGATTGATCTTTGCCGGCAAGCAGCTGGAAGACGGACGAACATTGTCTGACTACAAC 5745227 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGT 25243 || || |||||||| || |||||| |||| Sbjct 5745228 ATCCAGAAGGAATCCACACTTCACTTGGT 5745256 >seq1358 Length=322254 Score = 93.3 bits (102), Expect = 3e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| ||||| | || ||| ||||| |||||||| ||||| || |||||||||||| Sbjct 61 GATAAGGAAGGAATCCCTCCAGACCAACAGAGACTTATATTTGCTGGTAAACAATTGGAA 120 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || | ||| | | ||||| ||||||||||| ||| ||| || || |||| ||| Sbjct 121 GACAATAGGACTTTATCTGATTATAATATTCAAAAAGAAAGTACACTACATTTGGTTTTA 180 Query 25248 CGATTACGAGGAGG 25261 ||||| ||||||| Sbjct 181 AGATTAAGAGGAGG 194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410768903302808