Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq3951 96.9 2e-15 >seq3951 Length=6844153 Score = 96.9 bits (106), Expect = 2e-15 Identities = 159/224 (71%), Gaps = 8/224 (4%) Strand=Plus/Plus Query 97109 CTAAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAG 97168 |||| | |||||||| || ||||| || || || |||||||| ||||||||||| | Sbjct 4102009 CTAATCCTGTGACATGTGCAATCATGTGTGTCAAAAGCGAATAGCTGGCAATGTTAAATG 4102068 Query 97169 GCACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAA---AGCTTTCCAT 97225 |||| || || |||||||| || |||||||| | | | || || | ||||||| Sbjct 4102069 GCACGCCCAGCCCCATATCTGCACTCCTTTGATACA--TTA-AGCAATTCAATTTTCCAT 4102125 Query 97226 CACACACATAAAACTGACTCAATAC-ATGACAGGGGGGCAACGCCATTTTTGGAACATCT 97284 | ||||| |||||| ||| || |||||| || || | ||||||| | |||| Sbjct 4102126 TAGCCACATGGAACTGA-ACAAGACAATGACAAGGAGGTAGAGCCATTTGACTGAGATCT 4102184 Query 97285 AAGACATTCCAAGCACACATCAACATTCTTCTATCGGTTGGGTT 97328 | |||||| |||||||| | ||| || || |||| ||| || Sbjct 4102185 GACGGATTCCATGCACACATTATCATCCTCCTGTCGGCTGGATT 4102228 Score = 84.2 bits (92), Expect = 2e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 97453 CCTTCTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCC 97512 || || ||||| ||| |||||| | ||||| | | | | || || ||||| |||||| Sbjct 4102799 CCCTCCTCTCTGTCAGTGAAACCTAAATTATCAAGAAATGCTCTGGAGCCATTAGCATCC 4102858 Query 97513 CAAATGTGCACACCAGATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCAC 97572 |||||||| || || | ||||| ||||||| || || || || || | |||| Sbjct 4102859 CAAATGTGAACTCCTTTTTGGGCAAGAACTTTGCTATCTGTTGAACCAGATATCATCCAC 4102918 Query 97573 AACAATTCTTCCACAACACCTCTCCAAAATACTCTCTTAGTTGTTAAGAGAGGAAA 97628 | || ||||| | ||||| || ||| ||||| ||||||||||| || || || Sbjct 4102919 AGTAACTCTTCAATTACACCCCTTGTAAACACTCTTTTAGTTGTTAATAGTGGTAA 4102974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346760450332040