Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq3133 190 2e-43 seq2310 138 1e-27 seq1114 129 5e-25 seq2352 87.8 2e-12 >seq3133 Length=7630298 Score = 190 bits (210), Expect = 2e-43 Identities = 373/546 (68%), Gaps = 4/546 (1%) Strand=Plus/Plus Query 21535 CGAAAACAACAAGCGTTTCGAA-ATCCATCCCGATAAAATCGTGGCGGCCTACTTTGTCG 21593 ||| || ||||||| ||| || | | || || ||| | || | || ||||| || | Sbjct 1021574 CGAGAAGAACAAGCCATTCAAACAGACTTCGGGA-AAAGTTGTCGGAGCGTACTTCGTTG 1021632 Query 21594 AATGGGGAGTGTACCTGAGACAGTTCCCCGTCGACAAGGTGCCGGCGCCGAATCTATCAC 21653 ||||||| || |||| ||| | ||||| || || || || || ||||| | | Sbjct 1021633 AATGGGGTGTCTACCCAAGAAAATTCCCTGTTGATCGTGTACCAATTCCTAATCTGACTC 1021692 Query 21654 ATATACTATACGGCTTCGTGCCGATATGCGGAGGCGACGGCATCAACGACGCGCTAAAAA 21713 || | | ||||| || | || || ||||||||||| |||||||||||| | || Sbjct 1021693 ATCTTTTGTACGGTTTTATTCCAATTTGCGGAGGCGATGGCATCAACGACAGTTTGAAGG 1021752 Query 21714 CGGTGCCTGGCAGTTTTGAGGCATTGCAACGTTCGTGTGCGGGTCGGGCCGATTTCAAGG 21773 | |||||||| | || | ||||| || || || || | |||||||| | Sbjct 1021753 AAATCGAAGGCAGTTTCCAAGCTCTTCAACGATCATGCAGCGGCCGCGAAGATTTCAAAG 1021812 Query 21774 TGGCTATACACGATCCGTGGGCCGCAATACAAAAGCCCCAAAAGGGCGTCTCGTCATGGA 21833 | | || |||||||||||||| || | || ||||| |||||||| | || || |||| Sbjct 1021813 TTTCAATTCACGATCCGTGGGCTGCTCTTCAGAAGCCACAAAAGGGTCTTTCTTCCTGGA 1021872 Query 21834 ACGAACCGTACAAAGGCAACTTTGGTCAACTGATGGCAATGAAGAGGGCCAATCCTCACA 21893 | || || |||||||||||||||||||| |||||| | | || |||| ||| || Sbjct 1021873 ATGAGCCATACAAAGGCAACTTTGGTCAGCTGATGTCTCTTAAACAAGCCAGGCCTGACC 1021932 Query 21894 TTAAAGTGTTCGCATCGATCGGCGGATGGACTCTGTCCGATCCATTTTATCATATGCAC- 21952 ||||| | | | || ||||| || |||||||| | ||||| || | || | | ||| Sbjct 1021933 TTAAAATCCTACCTTCCATCGGTGGCTGGACTCTTGCAGATCCCTTCT-TCTTCTTCACA 1021991 Query 21953 GACGCCGACGTCAGACGGGTGTTTATCGATTCAGTTGAAGAATTTCTGCTCACGTGGAAG 22012 ||| || ||| || | ||||| || |||| || || | || |||||| Sbjct 1021992 GACAAAGAGAAGAGAGATCGCTTCGTGGATTCTGTGAAAGATTTCCTTCAGACATGGAAG 1022051 Query 22013 TTCTATGACGGCGTCCACATCGATTGGGAGTTTCCCGGCGGCAAGGGAGCCAACCCCGAC 22072 |||| ||||| || | ||||||||||| || || ||||| |||||||| || || ||| Sbjct 1022052 TTCTTCGACGGTGTAGATATCGATTGGGAATTCCCTGGCGGTAAGGGAGCTAATCCAGAC 1022111 Query 22073 GTGGGC 22078 | ||| Sbjct 1022112 CTTGGC 1022117 Score = 95.1 bits (104), Expect = 1e-14 Identities = 88/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 46993 CCGCAGGCGATGCGACCGCCCGAGTTGCCGGTGGTCTTGCTCAATGGATGACCGCCGAGA 47052 ||||| ||||||||| |||||| |||||||||||||||||| | ||| ||||| | | Sbjct 7348720 CCGCATGCGATGCGAGCGCCCGCGTTGCCGGTGGTCTTGCTGAGCTCATGCCCGCCAATA 7348779 Query 47053 CCCAAGTCGTCGCGGTCCGAGTGAATGACCAGACTGCGTCCGATGACGCTGT 47104 || | ||| || |||| | ||| | ||||| |||||||||||| ||||| Sbjct 7348780 CCGAGGTCATCAGGGTCGGCGTGCACCACCAGGGTGCGTCCGATGATGCTGT 7348831 >seq2310 Length=6428792 Score = 138 bits (152), Expect = 1e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| ||| || || || ||||||||||||||| | || || ||| || Sbjct 5746624 ACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGAGAGTGTACGACCATCTTCT 5746565 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || ||| |||||||||| ||||| || ||||| || || ||||||||| | Sbjct 5746564 AGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCTTGA 5746505 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| |||||| | || | |||||| | | || ||||| | ||| | || ||| Sbjct 5746504 ATTTTGGCTTTAACATTCTCAATGGTGTCTGAGGGTTCCACCTCAAGGGTGATGGTCTTG 5746445 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || ||||| |||||||| Sbjct 5746444 CCAGTCAAGGTCTTCACAAAGATCTGCAT 5746416 Score = 127 bits (140), Expect = 2e-24 Identities = 154/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||| | ||| || || ||||| || ||||| || | ||||| ||| || Sbjct 5745485 CACCAAGTGTAGTGTCGATTCCTTTTGGATATTGTAGTCCGAAAGTGTGCGACCATCTTC 5745426 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 |||||| || || || |||| ||||| |||||||| || || ||||| ||||||||| Sbjct 5745425 GAGCTGCTTACCCGCAAAGATAAGACGTTGCTGATCTGGGGGAATGCCTTCCTTGTCTTG 5745366 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 |||||| ||| || | ||| | ||||||| | || ||||| | || | ||||| Sbjct 5745365 AATTTTGGCTTTTACATTTTCAATTGTGTCCGAGGGTTCAACCTCTAATGTGATGGTTTT 5745306 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||| |||| || || |||||||||||||| Sbjct 5745305 GCCTGTCAAGGTCTTCACAAAAATCTGCAT 5745276 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||||| ||| || || || ||||||||||||||| | || || ||| || Sbjct 5745940 ACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGAGAGTGTACGACCATCTTCT 5745881 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || ||| |||||||||| ||||| || || || || || ||||||||| Sbjct 5745880 AGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGG 5745821 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || |||||| | |||| |||||| | | || ||||||| ||| | || || Sbjct 5745820 ATCTTGGCTTTAACATTCTCGATGGTGTCAGAGGGTTCCACCTCGAGGGTGATGGTCTTT 5745761 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || || ||||| |||||||| Sbjct 5745760 CCTGTTAAGGTCTTCACAAAGATCTGCAT 5745732 Score = 116 bits (128), Expect = 3e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 118527 AACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCC 118586 ||||||||||||| || ||||||||||| || || |||||| | || || ||| Sbjct 5746399 AACACCAAGTGGAGGGTGGACTCTTTTTGGATATTATAATCGGAGAGTGTACGACCATCT 5746340 Query 118587 TCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCT 118646 || |||||||| || ||| |||||||||| ||||| || || || || || ||||||||| Sbjct 5746339 TCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCT 5746280 Query 118647 GTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTT 118706 || || |||||| | |||| |||||| | | || || |||| || | || Sbjct 5746279 TGGATCTTGGCTTTAACATTCTCGATGGTGTCGGAGGGTTCCACTTCGAGAGTGATGGTC 5746220 Query 118707 TTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || | || || ||||| |||||||| Sbjct 5746219 TTTCCCGTTAAGGTCTTAACAAAGATCTGCAT 5746188 Score = 114 bits (126), Expect = 1e-20 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCT 118587 |||||||||| || ||||||||||| |||||||| | | | |||| ||| ||||| Sbjct 5746168 ACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGT--CAGAGAGTGTACGTCCATCCT 5746111 Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 | |||||||| || ||| |||| | | |||||| || || || || || ||||||||| Sbjct 5746110 CTAGCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATACCTTCCTTGTCTT 5746051 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 || || ||||| | |||| |||||| | ||||| || | ||| | |||| Sbjct 5746050 GGATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGGTTCGACTTCTAAGGTAATGGTTT 5745991 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| |||| || || ||||| |||||||| Sbjct 5745990 TGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5745960 Score = 114 bits (126), Expect = 1e-20 Identities = 153/211 (73%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--ATCCT 118587 |||||||||| || ||||||||||| |||||||| | | | |||| ||| ||||| Sbjct 5746852 ACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGT--CAGAGAGTGTACGTCCATCCT 5746795 Query 118588 CGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTG 118647 | |||||||| || ||| |||| | | |||||| || || || ||||| ||||| ||| Sbjct 5746794 CTAGCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATGCCTTCCTTATCTT 5746735 Query 118648 TAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTT 118707 || || ||||| | |||| |||||| | ||||| || | ||| | |||| Sbjct 5746734 GGATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGGTTCGACTTCTAAGGTAATGGTTT 5746675 Query 118708 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| |||| || || ||||| |||||||| Sbjct 5746674 TGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5746644 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | ||| || || || || |||||||| || || ||||| ||| || Sbjct 5744800 ACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAATGTGCGTCCATCTTCC 5744741 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||| || || |||| | | |||||| || || || |||||||| |||||| | Sbjct 5744740 AGCTGTTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTGA 5744681 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || ||||| | ||| | ||||||| ||| ||||| | ||| | || ||| Sbjct 5744680 ATCTTGGCCTTAACATTTTCAATTGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTTG 5744621 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| || || |||||||||||||| Sbjct 5744620 CCCGTCAAGGTCTTCACAAAAATCTGCAT 5744592 Score = 105 bits (116), Expect = 6e-18 Identities = 156/219 (71%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGT--A 118583 ||| |||||||||| ||| || || || ||||||||||||| | | |||| ||| | Sbjct 5745716 CAATACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAAT--CAGAGAGTGTACGTCCA 5745659 Query 118584 TCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTG 118643 ||||| | |||||| || || |||||||||| ||||| || || || || || ||||| Sbjct 5745658 TCCTCCAACTGTTTACCGGCAAAGATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTA 5745599 Query 118644 TCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACC 118703 ||| || || |||||| | || | ||| || | || ||||| | || | Sbjct 5745598 TCTTGGATCTTGGCTTTAACATTCTCAATGGTATCTGAAGGTTCAACCTCCAATGTGATG 5745539 Query 118704 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 118742 || ||||| |||| || || |||||||| |||||| || Sbjct 5745538 GTCTTGCCAGTCAAGGTCTTAACAAAAATTTGCATGCCT 5745500 >seq1114 Length=8361563 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | |||||||||||||| | ||| || || || || |||||||| ||| Sbjct 2710523 TACCTCCTCGAAGCCTCAACACCAAGTGAAGTGTCGATTCCTTCTGGATGTTGTAGTCGG 2710464 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || || || ||| || | |||||| || ||| |||| | | |||||||| || | Sbjct 2710463 ACAATGTACGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTG 2710404 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | |||||||| |||||| |||||| ||| || | ||||| ||||| | | || | Sbjct 2710403 GAATGCCCTCTTTGTCTTGAATTTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCAA 2710344 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | || | ||||| || || || |||||||| || |||||||| Sbjct 2710343 CCTCTAACGTTATGGTTTTACCCGTAAGGGTTTTTACGAAGATCTGCAT 2710295 >seq2352 Length=6838751 Score = 87.8 bits (96), Expect = 2e-12 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 118616 CTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGT 118675 |||||| || ||||| || |||||||| ||| ||| || ||| || | ||||| ||| Sbjct 482059 CTGCTGGTCCGGAGGGATTCCCTCCTTATCTTGAATCTTGGCTTTGACATTTTCGATGGT 482000 Query 118676 GTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTG 118735 ||||| | || ||||||| ||| | ||||| || || || ||||| || |||||||| Sbjct 481999 GTCCGAGGGTTCAACCTCGAGGGTGATGGTTTTCCCCGTGAGGGTTTTCACGAAAATCTG 481940 Query 118736 CAT 118738 ||| Sbjct 481939 CAT 481937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433800939119824