Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_002188.1 Length=288539 Score E Sequences producing significant alignments: (Bits) Value seq4120 87.8 3e-12 >seq4120 Length=16292344 Score = 87.8 bits (96), Expect = 3e-12 Identities = 98/130 (75%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 189412 CATTA-AACAACTCGAAAAAGCGGAAACTCATGATCCTCTATGGAACGCGTCACAAATGC 189470 ||||| ||||||| | ||||| |||||||||||| || |||||| | ||||| | | Sbjct 14710050 CATTAGAACAACTTGCCAAAGCAGAAACTCATGATGAGCTTTGGAACTCTGCACAACTAC 14709991 Query 189471 AGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTATTGGGCTAAGAAGATAC 189530 || | || | ||||| || |||||| | | | | || ||||| |||| |||||||| | Sbjct 14709990 AGCTTGTAAATGAAGGCAAGATGCATGGCTCTATCCGGATGTACTGGGGCAAGAAGATTC 14709931 Query 189531 TTGAATGGAC 189540 | |||||||| Sbjct 14709930 TAGAATGGAC 14709921 Score = 84.2 bits (92), Expect = 4e-11 Identities = 103/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 189404 ATATATTCCATTA-AACAACTCGAAAAAGCGGAAACTCATGATCCTCTATGGAACGCGTC 189462 ||||| || |||| |||| || ||||| ||||||||||| || ||||| | | Sbjct 14704193 ATATACTC-ATTAGAACAGCTGTCTAAAGCAGAAACTCATGACGAACTGTGGAATTCAGC 14704135 Query 189463 ACAAATGCAGATGGTGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTATTGGGCTAA 189522 |||| ||||| || | | |||||| || |||||| | ||| | || ||||| |||| || Sbjct 14704134 ACAACTGCAGCTGCTCAAAGAAGGCAAGATGCATGGCTTTATGCGCATGTACTGGGGCAA 14704075 Query 189523 GAAGATACTTGAATGGAC 189540 |||||| || |||||||| Sbjct 14704074 GAAGATTCTAGAATGGAC 14704057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 923132499342880