Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq5346 125 1e-23 seq2115 125 1e-23 seq2352 107 3e-18 seq1358 107 3e-18 >seq5346 Length=541963 Score = 125 bits (138), Expect = 1e-23 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | |||||| |||||||||| ||| |||||| ||||||||||| || Sbjct 231463 CCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCGGAT 231404 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| || | || || |||||||| |||||||| || | ||| || || || ||||| Sbjct 231403 AAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAGGG 231344 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||||||||||||||| |||||| ||| ||||||| Sbjct 231343 ATTCCTTCTTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCTACT 231284 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || | |||||||| || ||||||||||| || | || || ||||| Sbjct 231283 TCCAAAGTGATTGTCTTTCCTGTTAATGTCTTTACAAAAATCTGCAT 231237 >seq2115 Length=629047 Score = 125 bits (138), Expect = 1e-23 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | |||||| |||||||||| ||| |||||| ||||||||||| || Sbjct 360781 CCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCGGAT 360840 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| || | || || |||||||| |||||||| || | ||| || || || ||||| Sbjct 360841 AAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAGGG 360900 Query 146171 ATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACT 146230 ||||||||||||||||| |||||| ||| ||||||| Sbjct 360901 ATTCCTTCTTTATCTTGGATCTTGGCTTTTACATTCTCAATAGTATCAGAAGGTTCTACT 360960 Query 146231 TCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 || | |||||||| || ||||||||||| || | || || ||||| Sbjct 360961 TCCAAAGTGATTGTCTTTCCTGTTAATGTCTTTACAAAAATCTGCAT 361007 >seq2352 Length=6838751 Score = 107 bits (118), Expect = 3e-18 Identities = 155/214 (72%), Gaps = 11/214 (5%) Strand=Plus/Minus Query 10484 ATTTATTGATATTGGAGCTGGAGTAATTGACGAAGATTATAGAGGAAATGTGGGAGTAAT 10543 ||||||| ||| ||| || || ||||| ||||||||| | || ||||| |||||| | Sbjct 3793201 ATTTATT---ATTACAGCCGGCGTCATTGATGAAGATTATCGTGGTAATGTTGGAGTAGT 3793145 Query 10544 ATTATTTAATCATTCTAATGAAGATTTT-ATAATAAATAGAGGAGATAGAATATCTCAAT 10602 | | || ||||||||| || |||||||| || |||| | |||||||||||| | |||| Sbjct 3793144 ACTCTTCAATCATTCTGATCAAGATTTTGATGTTAAAAA-AGGAGATAGAATTGCACAAT 3793086 Query 10603 TAATATGTGAAAAAATTTTATATCCTAAAATGTTA---AAAGTCGATAGTTTATCAGAAA 10659 | || |||||| |||| || | || | || || |||| |||| | ||||| | Sbjct 3793085 TGATCTGTGAACAAATCTTCCACCC---AGTGATAGAGGAAGTTAGTAGTCTTTCAGATA 3793029 Query 10660 CAAAAAGATCTGATTTTGGTTTTGGATCTACTGG 10693 ||| ||| || || || ||||| || ||||| Sbjct 3793028 CAACAAGGTCAGAACGAGGATTTGGTTCAACTGG 3792995 >seq1358 Length=322254 Score = 107 bits (118), Expect = 3e-18 Identities = 106/137 (77%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 || ||||| | |||||| |||||||||| ||| |||||| ||||||||||| || Sbjct 194 CCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCTTTTTGAATATTATAATCAGAT 135 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 | ||| || | || || |||||||| |||||||| || | ||| || || || ||||| Sbjct 134 AAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATAAGTCTCTGTTGGTCTGGAGGG 75 Query 146171 ATTCCTTCTTTATCTTG 146187 |||||||| |||||||| Sbjct 74 ATTCCTTCCTTATCTTG 58 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743474613386240