Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq2310 107 1e-18 seq1114 98.7 6e-16 >seq2310 Length=6428792 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | ||||||| ||| | |||| || ||||| ||||||||||| || Sbjct 5747326 CCGCCGCGAAGACGGAGCACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAG 5747267 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || |||| | || |||||||| ||||| ||||| || || || |||||||| ||| Sbjct 5747266 AGTGTACGGCCATCCTCCAACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGG 5747207 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| || ||| ||||| | || | || | || | | || || Sbjct 5747206 ATACCTTCCTTGTCTTGGAT-TTTGGCTTTAACATTCTCGATGGTGTCCGAAGGCTCCAC 5747148 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||| || | || || || ||||||||||| Sbjct 5747147 CTCCAAGGTGATGGTCTTGCCTGTCAAGGTCTTGACGAAGATCTGCAT 5747100 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| ||| | || ||| ||||| ||||||||||| ||| Sbjct 5745274 CCACCACGCAGACGGAGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGAC 5745215 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | || |||| |||| ||||||||| || || || | | ||||||||| ||| Sbjct 5745214 AATGTTCGTCCGTCTTCCAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGG 5745155 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| || ||||||||| | || | || | || | | ||| || Sbjct 5745154 ATGCCTTCCTTGTCTTGGAT-TTTTGCTTTGACATTTTCAATTGTGTCAGAGGGTTCCAC 5745096 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||||||||| || | || || |||||||||||||| Sbjct 5745095 TTCTAATGTGATGGTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5745048 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| ||| | || ||| ||||| ||||||||||| ||| Sbjct 5745046 CCACCACGCAGACGGAGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGAC 5744987 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | || |||| |||| ||| ||||| || || || | | ||||||||| ||| Sbjct 5744986 AATGTTCGCCCGTCTTCCAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGG 5744927 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || |||||||| || ||||||||| | || | || | || | | ||| || Sbjct 5744926 ATGCCTTCCTTGTCTTGGAT-TTTTGCTTTGACATTTTCAATTGTGTCAGAGGGTTCCAC 5744868 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||||||||| || | || || |||||||||||||| Sbjct 5744867 TTCTAATGTGATGGTTTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5744820 Score = 91.5 bits (100), Expect = 1e-13 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| ||| | || ||| ||||| |||||||| ||||| Sbjct 5746642 CCACCTCGCAGACGTAGTACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGAG 5746583 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC--GACGG 34280 || ||| | || || | ||| ||||| ||||| ||||| || |||||||| || || Sbjct 5746582 AGTGTACGACCATCTTCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGAGGG 5746523 Query 34281 GCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAG-ATCGGCTATCGAATCGGTCGATTCG 34339 || || |||||||| || ||| |||||| || | || | || | | ||| Sbjct 5746522 ATAC-CT-TCCTTGTCTTGAAT-TTTGGCTTTAACATTCTCAATGGTGTCTGAGGGTTCC 5746466 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || | |||||||| ||||| || | || ||||||||||||||||| Sbjct 5746465 ACCTCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 5746416 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || || || ||||||||||| || || |||| | || |||||||| ||||| ||||| Sbjct 5747062 TCCTTTTGGATGTTGTAGTCCGAGAGTGTACGGCCATCCTCCAACTGTTTGCCGGCGAAG 5747003 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATC 34317 ||||| || |||||||| ||| | | |||||||| ||| || ||||| | || Sbjct 5747002 ATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATC-TTGGCTTTAACATT 5746944 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | |||| | ||| || || | |||||||| || || || | || || || Sbjct 5746943 CTCGATGGTGTCGGAGGGTTCCACTTCGAGAGTGATGGTCTTTCCCGTTAAGGTCTTAAC 5746884 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 5746883 GAAGATCTGCAT 5746872 Score = 84.2 bits (92), Expect = 1e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| |||||||| ||||| || ||| | || || | ||| ||||| ||||| Sbjct 5745923 TTCCTTCTGAATGTTGTAATCGGAGAGTGTACGACCATCTTCTAGCTGTTTGCCGGCGAA 5745864 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAG-AT 34316 ||||| || |||||||| ||| | | |||||||| ||||| |||||| || Sbjct 5745863 GATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGGATCTTG-GCTTTAACAT 5745805 Query 34317 CGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCA 34376 | || | || | | ||| || || | |||||||| || || || | || |||| Sbjct 5745804 TCTCGATGGTGTCAGAGGGTTCCACCTCGAGGGTGATGGTCTTTCCTGTTAAGGTCTTCA 5745745 Query 34377 CAAAGATCTGCAT 34389 ||||||||||||| Sbjct 5745744 CAAAGATCTGCAT 5745732 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | || |||| ||| | || ||| ||||| ||||||||||| ||| Sbjct 5744818 CCACCACGCAGACGGAGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGAC 5744759 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | || | || |||| ||| ||||| || || || | | ||||||||| ||| Sbjct 5744758 AATGTGCGTCCATCTTCCAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGG 5744699 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||| ||||| ||||| ||| | || | || | || | | || || Sbjct 5744698 ATGCCCTCTTTGTCTTGAATCTTGGCCTTAACATTTTCAATTGTGTCCGAAGGCTCCACC 5744639 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 |||| |||||||| ||||| || | || |||||||| ||||||||| Sbjct 5744638 TCCAAGGTGATGGTCTTGCCCGTCAAGGTCTTCACAAAAATCTGCATC 5744591 >seq1114 Length=8361563 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || ||||||| ||||| ||| | || ||| ||||| ||||||||||||||| Sbjct 2710521 CCTCCTCGAAGCCTCAACACCAAGTGAAGTGTCGATTCCTTCTGGATGTTGTAGTCGGAC 2710462 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| | || |||||||| ||||| ||||| || | | ||||| || || Sbjct 2710461 AATGTACGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGA 2710402 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGC-TTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||| ||||| || ||| || |||| || | || | || | | ||| || Sbjct 2710401 ATGCCCTCTTTGTCTTGAAT-TTTCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCAAC 2710343 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | ||| |||||||| || || || ||||| || ||||||||||| Sbjct 2710342 CTCTAACGTTATGGTTTTACCCGTAAGGGTTTTTACGAAGATCTGCAT 2710295 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323050060584320