Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq1673 253 2e-62 seq1390 248 8e-61 seq4120 96.9 3e-15 >seq1673 Length=160240 Score = 253 bits (280), Expect = 2e-62 Identities = 584/876 (67%), Gaps = 24/876 (3%) Strand=Plus/Plus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 ||||||||| | | || | || || ||||| |||||||| || | | ||||||||| Sbjct 44700 TTTTTGATACTGAGATTCTTTTTTGTCGAAGAAGTTTGTTTTACCAACAAGTGAAATATT 44759 Query 16003 TTCCATAAAATCAAAAGGATTTTTTGAACAATAGTATTTATCGCATCCCAATTCCAACAA 16062 |||||||||||| |||||||| || || ||||| ||| | | | ||| Sbjct 44760 TTCCATAAAATCGAAAGGATTGGCTGTGTTGTAAATCTTATCTTCTCCAAGGTTTATCAA 44819 Query 16063 TAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATTAA 16122 |||||| || || |||||||| ||||| | ||| | | || |||||||| || | Sbjct 44820 TAATCTGTCGGCTACAAATTCAATATAATTGCACATAAGTTTGCAATTCATTCCAATAAG 44879 Query 16123 TTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATTAT 16182 ||||| || | ||| ||||||| | || ||| || || || || |||| | || Sbjct 44880 ATTAACTGGTAAACTTTCACTTAAAAATTCTTGTTCGATTTTTACTGCCTCAACAACGAT 44939 Query 16183 ATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTTTAAACATT----ATACAAG 16238 ||| ||| | ||| || | || ||||| ||| ||| | ||||| Sbjct 44940 ATC-CTTGATC------TTATCGCATTTATTGATAAGA---TAACTATTTAACAAACAAG 44989 Query 16239 CAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAAGACCTG 16298 |||| || ||||||| ||||| || | || || | || |||||||| | | ||| | Sbjct 44990 CAAACTCGCAATGCAGACCTTCATCTCGGCTAATAAGTTCATTTGAAAACGACAAACCAG 45049 Query 16299 GCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGAATATAC 16358 |||| || |||| ||| || | ||| || || | ||||||| ||| |||||| || | Sbjct 45050 GCATGAGACCTCTTTTCTTTAACCAGAAGATCGAAGCAAATGCTCCACTAAAGAAAATTC 45109 Query 16359 CTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttactttctatcc 16418 ||||||| |||||||| | | || | | | || |||||| || |||| Sbjct 45110 CTTCAACACAAGCAAATGCGATAACTCTGGTAGCAAAAGTAGATTTTTTATCTTTAATCC 45169 Query 16419 attttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCATTAAATA 16478 |||| |||||||| || || | ||||| | | || | | ||| ||||||| | Sbjct 45170 ATTTCAAAGCCCAATCAGCCTTCTTTTTAATAGATGGTATTGTGTTTATAGCATTAAGAA 45229 Query 16479 AATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTG 16538 || ||||||||| | ||| |||||| |||||||| |||||| ||||||||| | Sbjct 45230 GATGATTTTTTTCGTCCGGATCACTAATATACGTATCTATAAGTAAAGAATACATTTCAG 45289 Query 16539 AATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTA 16598 |||| ||||| || || ||| ||| || |||||||| ||| | || || | || | Sbjct 45290 AATGGATATTTTCGATAACTACCTGGAATCCATAAAAACATTTTGCCTCTAAAATGGTGA 45349 Query 16599 CTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAA 16658 |||| | |||||||||| | | || || || || ||||| ||| || |||| Sbjct 45350 CTTCCTCGGAAAACCTTTCAACAAGATTCATATTTACAATACCATCAGAAGCAGCGAAAA 45409 Query 16659 ACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTG-----AAAGTTTTAACCAGTC 16713 | ||||| || ||| || ||| | | |||| ||||| |||| || ||| || Sbjct 45410 ATGCAAGAATATGTGAAACAAAGTATCTTTC---ATCTGGTGTTAAAGAATT--CCAATC 45464 Query 16714 AGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGCCTTTTT 16773 | | ||||| ||| | ||| || ||||| | |||||||||||| | || | ||| Sbjct 45465 ATATAAATCGGCTGAAAGATCAACTTCTTCAGCGGTCCAAAAAGAACATTCGGCTTGTTT 45524 Query 16774 ATACATTTTCCATATGTCTTCGTAAACAATAGGAAA 16809 ||||| ||||| || || | || |||||| || Sbjct 45525 GTACATCTTCCAGATATCGTGATATTTAATAGGGAA 45560 >seq1390 Length=76047 Score = 248 bits (274), Expect = 8e-61 Identities = 589/882 (67%), Gaps = 36/882 (4%) Strand=Plus/Minus Query 15943 TTTTTGATATTCACTAACTCTCTTTTCAAAGAAATTTGTTTTTCCTTCTAATGAAATATT 16002 ||||||||| | | || | || |||||||| |||||||| || | | ||||||||| Sbjct 55086 TTTTTGATACTGAGATTCTTTTTTGTCAAAGAAGTTTGTTTTACCAACAAGTGAAATATT 55027 Query 16003 TTCCATAAAATCAAAAGGATT-----TTTTGAACAATAGTATTTATCGCATCCCAAT-TC 16056 |||||| ||||| |||||||| | ||| | ||| ||| | || ||||| | Sbjct 55026 TTCCATGAAATCGAAAGGATTGGCTGTGTTGTA-AATCTTATCT-TC----CCCAAGGTT 54973 Query 16057 CAACAATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCC 16116 | ||||||||| || || |||||||| ||||| | ||| | | || |||||||| Sbjct 54972 TATCAATAATCTGTCGGCTACAAATTCAATATAATTGCACATAAGTTTGCAATTCATTCC 54913 Query 16117 TATTAATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAAT 16176 || | |||||||| | ||| ||||||| | || ||| || || || || |||| Sbjct 54912 AATAAGATTAACAGGTAAACTTTCACTTAAAAATTCTTGTTCGATTTTTACTGCCTCAAC 54853 Query 16177 GATTATATCTCTTACTACACTATTTAACGGAGGGTTTAATAAGTGTTTAAACATT----A 16232 | ||||| ||| | ||| || | || ||||| ||| ||| | Sbjct 54852 AACAATATC-CTTGATC------TTATCGCATTTATTGATAAGA---TAACTATTTAACA 54803 Query 16233 TACAAGCAAAATCACAATGCAATCCTTCGTCCCTACTTATTAACTCGTTTGAAAATGTAA 16292 ||||||||| || ||||||| ||||| || | || || | || |||||||| | | Sbjct 54802 AACAAGCAAATTCGCAATGCAGACCTTCATCTCGGCTAATGAGTTCATTTGAAAACGACA 54743 Query 16293 GACCTGGCATTAGTCCTCGTTTTTTAATCCAAAATATAGCGGCAAATGAACCAGAAAAGA 16352 ||| ||||| || |||| ||| || | ||| || || | ||||||| ||| ||||| Sbjct 54742 AACCAGGCATGAGACCTCTTTTCTTTAACCAGAAGATCGAAGCAAATGCTCCACTAAAGA 54683 Query 16353 ATATACCTTCAACTGCGGCAAATGCAACCAATCGCTCACCGTACGTTCTAtttttacttt 16412 | || ||||| || |||||||| | | || | | | || ||||| || Sbjct 54682 AAATTCCTTCGACACAAGCAAATGCGATAACTCTGGTAGCAAAAGTAGATTTTTTGTCTT 54623 Query 16413 ctatccattttttagcccaatttgctttttgtttAACACAGTTCATGTTCTCTATTGCAT 16472 ||||||||| ||||||| || || | ||||| | | || | | ||| |||| Sbjct 54622 TTATCCATTTCAATGCCCAATCAGCCTTCTTTTTAATAGATGGTATTGTGTTTATAGCAT 54563 Query 16473 TAAATAAATAAtttttttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACA 16532 ||| | || ||||||||| | ||| |||||| |||||||| |||||| ||||| Sbjct 54562 TAAGAAGATGATTTTTTTCGTCCGGATCACTAATATACGTATCTATAAGTAAAGAATACA 54503 Query 16533 TTTCTGAATGAATATTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATA 16592 |||| ||||| ||||| || || ||| ||| || |||||||| ||| | || || | | Sbjct 54502 TTTCAGAATGGATATTTTCGATAACTACCTGGAATCCATAAAAACATTTTGCCTCTAAAA 54443 Query 16593 TTTGTACTTCAGAGTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTG 16652 | ||||| | |||||||||| | | || || || || ||||| ||| | Sbjct 54442 TGGTGACTTCCTCGGAAAACCTTTCAACAAGATTCATATTTACAATACCATCAGAAGCAG 54383 Query 16653 CAAAAAACGCAAGTATGTGTTTAATAAAAtttttttCGTTATCTG-----AAAGTTTTAA 16707 | ||||| ||||| || ||| || ||| | | |||| ||||| |||| || Sbjct 54382 CGAAAAATGCAAGAATATGTGAAACAAAGTATCTTTC---ATCTGGTGTTAAAGAGTT-- 54328 Query 16708 CCAGTCAGAAAAATCTTTTGATAAATCGACCTCTTCTACAGTCCAAAAAGAAGCAACAGC 16767 ||| ||| | ||||| ||| | ||| || ||||| | |||||||||||| | || Sbjct 54327 CCAATCATATAAATCGGCTGAAAGATCAACTTCTTCAGCGGTCCAAAAAGAACATTCGGC 54268 Query 16768 CTTTTTATACATTTTCCATATGTCTTCGTAAACAATAGGAAA 16809 | ||| ||||| ||||| || || | || |||||| || Sbjct 54267 TTGTTTGTACATCTTCCAGATATCGTGATATTTAATAGGGAA 54226 >seq4120 Length=16292344 Score = 96.9 bits (106), Expect = 3e-15 Identities = 137/193 (71%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 16488 tttCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATAT 16547 ||||||| ||| ||| |||||||| || || || ||||| || || || | || Sbjct 7436394 TTTCTTTAGGATCCCTAATGTAAGTATCAATCAGCAAGGAGTACATCTCAGAGTGTACAT 7436453 Query 16548 TCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTCAGAGT 16607 ||||||| || || || || ||||||||| | || ||||| ||||| ||||| Sbjct 7436454 TCTCCATAGCAATTTGGAATCCATAAAAGAACCTTGCTTCACCAATTTGAACTTCTTGTG 7436513 Query 16608 AAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGCAAGTA 16667 |||| | ||| ||| || || |||||||| ||||| ||| |||||||| || | | Sbjct 7436514 AAAATCGCTCTACTAGATTCTCATTAACTATACCATCAGAAGCAGCAAAAAATGCCAAAA 7436573 Query 16668 TGTGTTTAATAAA 16680 ||||||||||| Sbjct 7436574 CATGTTTAATAAA 7436586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462479786039200