Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq3133 260 1e-64 seq2310 131 1e-25 >seq3133 Length=7630298 Score = 260 bits (288), Expect = 1e-64 Identities = 328/446 (74%), Gaps = 11/446 (2%) Strand=Plus/Plus Query 13216 ACTGGCCCCGTTGTATGAAGCAGAGACCCGAGCAGATGGCGGATGCCGGTTTCTTCTACA 13275 ||||||| || || ||| ||||| ||||||| || ||||||| ||||| |||||||||| Sbjct 2611698 ACTGGCCGCGCTGCATGCGGCAGAAACCCGAGGAGCTGGCGGAGGCCGGCTTCTTCTACA 2611757 Query 13276 CTGGCTACGGTGACAATACAAAGTGCTTCTATTGTGACGGCGGATTGAAAGATTGGGAGC 13335 | ||| |||| ||||| || || |||||||| || |||||||| | || || |||||| Sbjct 2611758 CCGGCCACGGGGACAAAACGAAATGCTTCTACTGCGACGGCGGCCTCAAGGACTGGGAGA 2611817 Query 13336 CGGAAGATGTACCTTGGGAACAGCATGTAAGATGGTTCGACCGTTGCGCCTACGTTCAGC 13395 || || || || ||||| ||||| | | ||||||||||| ||||| |||||||||| Sbjct 2611818 ACGACGACGTCCCGTGGGAGCAGCACGCGCGCTGGTTCGACCGCTGCGCTTACGTTCAGC 2611877 Query 13396 TAGTCAAGGGTAGAGACTACGTACAGAAAGTCATCACGGAAGCCTGCGTGTTACC--CGG 13453 | || || || | ||||||||||| ||||| || |||| ||||||| | | || Sbjct 2611878 TGGTGAAAGGCCGCGACTACGTACAAAAAGTGATGTCGGAGGCCTGCGCCATCTCGGCGC 2611937 Query 13454 TGA--GAACACTACCGTGTCAACAGCCGCGCCAGTGTCCGAGCCTATACCTGAGACAAAA 13511 || ||||| | | || || |||| | | |||| || | ||| ||| Sbjct 2611938 CGAAGGAACA-GAAGGAATCGACCCTCGCGGCGTCGACCGACCC---CGCAAAGAGTAAA 2611993 Query 13512 ATTGAAAAA---GAGCCCCAAGTGGAAGATTCGAAACTGTGCAAGATATGCTACGTAGAA 13568 | ||| ||| ||| | ||||| || ||||| ||||||||||||||||||| || Sbjct 2611994 AGTGATAAAGAGGAGAACGTTGTGGAGGACTCGAAGCTGTGCAAGATATGCTACGCGGAG 2612053 Query 13569 GAGTGCATCGTGTGCTTCGTACCGTGCGGTCACGTGGTGGCGTGTGCCAAGTGTGCGTTG 13628 ||| ||| |||||||||||| |||||||| |||||||||||||| |||||||| ||| || Sbjct 2612054 GAGCGCAACGTGTGCTTCGTGCCGTGCGGGCACGTGGTGGCGTGCGCCAAGTGCGCGCTG 2612113 Query 13629 AGTGTAGATAAGTGTCCGATGTGTCG 13654 || ||||| || ||||| || Sbjct 2612114 TCGACGGACAAGTGCCCCATGTGCCG 2612139 Score = 156 bits (172), Expect = 3e-33 Identities = 628/975 (64%), Gaps = 23/975 (2%) Strand=Plus/Minus Query 6371 ATCTCCCTGTAGTCCACCACACCCTCCTCCCAAGTGCCTTTCACTTTACCCGTCGCCACC 6430 || || ||||| || || ||||| || | |||||| ||||| || || ||||| Sbjct 1022581 ATTTCTCTGTAATCAACTACACCGTCTTGCCAAGTACCTTTGACAGGTCCTGTCGCGTTG 1022522 Query 6431 CCACTAAACAGATTGTTGTTCGTGTAATTCGTCACACCCGACCACCCCCTGCCGTACATA 6490 || | || |||| || | |||||| ||||| | ||| || | ||||||||| Sbjct 1022521 CCTGTGAAGGGATTATTATCTTCGTAATTGTGGACACCGGTCCAGCCGCGTCCGTACATA 1022462 Query 6491 GCCACCCCCACCACCAACTTGCCACTGTTCACACTCTGGTTCAA-CAAACGCCTCAACGC 6549 || || |||||||| | ||| | ||| |||| || | ||| |||| ||| | Sbjct 1022461 GCTACACCCACCACAATCTTCTTAGGGTTGACAC-CTTGAGCAAGCAAATATTTCACACC 1022403 Query 6550 AAAGTCTGTGGTGTAGTTTTCGTGGGTTTTCCACGACGGTGGATACAGAGGTGCGTGGTA 6609 |||||| || ||||| |||| | | ||||| | || | || || || | || | Sbjct 1022402 AAAGTCAGTTGTGTAAGTTTCCTTAGGGTTCCAAGCGGGAGCGTAAAGCGGAGTCTGATG 1022343 Query 6610 GCCCAG---ATCCGTCATCGACCACGCACCCTTGTAATCGTAGTTCATCACGAAAATGTA 6666 || || ||| || | ||||| || || ||| | ||||| |||| | ||| |||| Sbjct 1022342 ACCGAGGGTATC-GTTA--GACCAGGCGCCTTTGAAGTCGTAACTCATAAGGAAGATGTG 1022286 Query 6667 GTCGAGATACTGTTGGCACTGTTTGTAGTCGACCACGTCTATCTTGTCGTAACCACCGCT 6726 ||| | |||| || || |||| ||||| || | ||||| || | ||| | || Sbjct 1022285 GTCCATGTACTTCTGAGCCTCACTGTAATCGACAACTTGAATCTTATCCCATCCAGCACT 1022226 Query 6727 GATGGCGCTCGTCAACTGCAATCTCCGGCCCGTCTTCTCCTCCAGCTCGTCCAACATTTG 6786 || || |||| || || || || |||| || || |||| |||||||| Sbjct 1022225 AATAGCAGAGGTCAGCTCGTATTTCTTACCGGTCTCTTCGGAAAGGTCGTTCAACATTTC 1022166 Query 6787 TCTCAAATCGCTCAGCAGCTGTACATAGGTGTACTTGTCGGTGTCAGCATCGCCCAACTT 6846 | ||| || ||| | | || || || | || || | | |||| | Sbjct 1022165 ACGCAATTCCTTCATTAATTCAACGTAA----ACATCTCCGTCCTTGGGACTGCCAAGGT 1022110 Query 6847 GTCG-TTCGCTCCCTTTCCTCCCGGAAACTCCCAGTCAATATCCACTCCGTCGAAAAACT 6905 | | || |||||||| || || || || ||||| || ||||| || |||||||| |||| Sbjct 1022109 CTGGATTAGCTCCCTTACCGCCAGGGAATTCCCAATCGATATCTACACCGTCGAAGAACT 1022050 Query 6906 TCCACGTCTCCAGAAACTCGCGCACGCTCTGCACAAACACCCGA---CGCTTGGCGGAGT 6962 |||| |||| || || || ||| | ||| || ||| | ||| | || Sbjct 1022049 TCCATGTCTGAAGGAAATCTTTCACAGAATCCACGAAG---CGATCTCTCTTCTCTTTGT 1021993 Query 6963 C-GTGCATCTTGTAGAAGGGGTCGCTAAGCGTCCACCCGCCTATGGAGGGTAGTATAGTC 7021 | ||| | | ||||||| || ||| ||||| || || ||||| ||||| || | Sbjct 1021992 CTGTGAAGAA-GAAGAAGGGATCTGCAAGAGTCCAGCCACCGATGGAAGGTAGGATTTTA 1021934 Query 7022 AGATTGGGGTTGTGGTGTTTGATGGCCATCAGCTGGCCAAAATTACCCTTATACGGCTCG 7081 || | || || ||||| | | ||||||||| ||||| || || || || ||||| Sbjct 1021933 AGGTCAGGCCTGGCTTGTTTAAGAGACATCAGCTGACCAAAGTTGCCTTTGTATGGCTCA 1021874 Query 7082 TCGTACGCCTCCACACCCTTTTGTGGTTTCTGTACGGCGCCCCACAAATCGTGTATACTC 7141 | | | | |||||||||||| ||||| | || ||||| |||||| || Sbjct 1021873 TTCCAGGAAGAAAGACCCTTTTGTGGCTTCTGAAGAGCAGCCCACGGATCGTGAATTGAA 1021814 Query 7142 ACTTTGAAATCGTCTCGGCCCGCGCACGATCTTTGCAACGCTT-CAAACGACCCCGGCAC 7200 ||||||||||| || ||||| ||| |||| ||| | |||| |||| || | | Sbjct 1021813 ACTTTGAAATCTTCGCGGCCGCTGCATGATCGTTGAAGAGCTTGGAAACTGCCTTCG-AT 1021755 Query 7201 CTGTTTCAAGGCGTCGTTGAGTCCGTCTCCCCCGCAAATGGGCACAAATCCGTACAGCAA 7260 | ||||| |||||||| || || || |||||||| || | ||| ||||||| | Sbjct 1021754 TTCCTTCAAACTGTCGTTGATGCCATCGCCTCCGCAAATTGGAATAAAACCGTACAAAAG 1021695 Query 7261 ATGGCTGAGATTGGGCACGGGCACCTTGTCTGCGGGAAACTGCCGTCCGTACACACCCCA 7320 ||| | ||||| || | || || || | || || | | | ||| |||||||| Sbjct 1021694 ATGAGTCAGATTAGGAATTGGTACACGATCAACAGGGAATTTTCTTGGGTAGACACCCCA 1021635 Query 7321 CTCCACAAAGTACGC 7335 || || |||||||| Sbjct 1021634 TTCAACGAAGTACGC 1021620 >seq2310 Length=6428792 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||| || | || ||||||||| || ||| ||||||||||||||||| ||| Sbjct 5746642 CCACCTCGCAGACGTAGTACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGAG 5746583 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| ||| | || || || ||||| |||||||| || | || || ||||| ||||| Sbjct 5746582 AGTGTACGACCATCTTCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGAGGG 5746523 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| |||||||| |||||| ||||| | | | | |||| |||||| Sbjct 5746522 ATACCTTCCTTGTCTTGAATTTTGGCTTTAACATTCTCAATGGTGTCTGAGGGTTCCACC 5746463 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || |||||||| |||| |||||||||||||| ||||| Sbjct 5746462 TCAAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 5746416 Score = 129 bits (142), Expect = 5e-25 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 ||||||||| || ||| |||||||| ||||||||||| || | ||| | || || Sbjct 5744801 TACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAATGTGCGTCCATCTTC 5744742 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 ||| ||||| ||||| || ||||| | ||| ||||| || || | ||||| ||||| Sbjct 5744741 CAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCTTG 5744682 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 ||| || |||||| | | ||||| | ||||||||||| ||| || ||||| Sbjct 5744681 AATCTTGGCCTTAACATTTTCAATTGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTT 5744622 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 |||||||| ||||||||||| || ||||| ||| Sbjct 5744621 GCCCGTCAAGGTCTTCACAAAAATCTGCATCTTG 5744588 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 ||||||||||| || ||||||||| ||||||||||| ||| || | || ||| Sbjct 5747308 ACCAAGTGCAGAGTAGACTCCTTCTGGATGTTGTAGTCCGAGAGTGTACGGCCATCCTCC 5747249 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 | ||||| |||||||| || | || || ||||| || || | ||| |||||||| Sbjct 5747248 AACTGTTTGCCGGCGAAGATAAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCTTGG 5747189 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| ||||| | | | | ||||| | ||||||||||| ||| || |||||| Sbjct 5747188 ATTTTGGCTTTAACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTTG 5747129 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| ||||| || ||||| ||||| Sbjct 5747128 CCTGTCAAGGTCTTGACGAAGATCTGCAT 5747100 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||| ||| | || ||||||||| || ||| ||||||||||||||||| ||| Sbjct 5745958 CCACCTCGCAAACGTAGTACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGAG 5745899 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 ||| ||| | || || || ||||| |||||||| || | || || ||||| || || Sbjct 5745898 AGTGTACGACCATCTTCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGG 5745839 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| |||||||| || || ||||| | | | | |||| |||||| Sbjct 5745838 ATACCTTCCTTGTCTTGGATCTTGGCTTTAACATTCTCGATGGTGTCAGAGGGTTCCACC 5745779 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || ||||| || || | |||||||||||||| ||||| Sbjct 5745778 TCGAGGGTGATGGTCTTTCCTGTTAAGGTCTTCACAAAGATCTGCAT 5745732 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 ||||||||| || ||| ||| || || ||||||||||| ||| || | || || Sbjct 5746169 TACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCAGAGAGTGTACGTCCATCCTC 5746110 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || ||||| |||||||| ||||| | ||| ||||| || || | ||| |||||||| Sbjct 5746109 TAGCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATACCTTCCTTGTCTTG 5746050 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || || |||||| | | | | |||| | || || || | |||||| || || Sbjct 5746049 GATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGGTTCGACTTCTAAGGTAATGGTTTT 5745990 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| |||| ||||| |||||||| ||||| Sbjct 5745989 GCCAGTCAAGGTCTTGACAAAGATCTGCAT 5745960 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 ||||||||| || ||| ||| || || ||||||||||| ||| || | || || Sbjct 5746853 TACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCAGAGAGTGTACGTCCATCCTC 5746794 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 || ||||| |||||||| ||||| | ||| ||||| || || | || ||||| || Sbjct 5746793 TAGCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATGCCTTCCTTATCTTG 5746734 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 || || |||||| | | | | |||| | || || || | |||||| || || Sbjct 5746733 GATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGGTTCGACTTCTAAGGTAATGGTTTT 5746674 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| |||| ||||| |||||||| ||||| Sbjct 5746673 GCCAGTCAAGGTCTTGACAAAGATCTGCAT 5746644 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 45127 TACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTC 45186 ||||||||| || ||| |||||||| ||||||||||| || | || |||| || Sbjct 5745029 TACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAATGTTCGCCCGTCTTC 5744970 Query 45187 CAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGC 45246 ||| ||||| ||||| || ||||| | ||| ||||| || || | || |||||||| Sbjct 5744969 CAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCTTG 5744910 Query 45247 AATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTT 45306 |||||| || || | | |||| ||||| || | || || || || Sbjct 5744909 GATTTTTGCTTTGACATTTTCAATTGTGTCAGAGGGTTCCACTTCTAATGTGATGGTTTT 5744850 Query 45307 GCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||| |||| ||||| |||||||| ||||| Sbjct 5744849 GCCAGTCAAGGTCTTGACAAAGATCTGCAT 5744820 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395048370937012