Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_003027.1 Length=150773 Score E Sequences producing significant alignments: (Bits) Value seq1390 298 5e-76 seq1673 293 2e-74 seq4120 136 4e-27 >seq1390 Length=76047 Score = 298 bits (330), Expect = 5e-76 Identities = 606/889 (68%), Gaps = 22/889 (2%) Strand=Plus/Minus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 ||||||||| | | || |||| ||||||||||| |||||||| | ||||| ||||| Sbjct 55086 TTTTTGATACTGAGATTCTTTTTTGTCAAAGAAGTTTGTTTTACCAACAAGTGAAATATT 55027 Query 13972 TTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAG 14031 |||||| ||||| || ||||| | || | | | ||||| || || | || | Sbjct 55026 TTCCATGAAATCGAAAGGATTGGCTGTGTTGTAAATCTTATCTTCCCCAAGGTTTATCAA 54967 Query 14032 TAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 14091 |||||| || || | || |||||||| | |||| | | |||||||| || || || Sbjct 54966 TAATCTGTCGGCTACAAATTCAATATAATTGCACATAAGTTTGCAATTCATTCCAATAAG 54907 Query 14092 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 14151 || ||||| | | | |||||||||||| ||| || || ||||| | ||| Sbjct 54906 ATTAACAGGTAAACTTTCACTTAAAAATTCTTGTTCGATTTTTACTGCCTCAACAACAAT 54847 Query 14152 AATCGTAATAATTTCATTAGAAGGAG-GATATTTTAGATGTTTAAAAATTAAACACGCAA 14210 | || | | || | || | | |||| || | ||||| || ||| |||| Sbjct 54846 A-TCCT--TGATCTTATCGCATTTATTGATAAGATAACTATTTAACAA----ACAAGCAA 54794 Query 14211 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 14270 | || ||||| || || ||||||| ||||| ||||| |||||||| | || || |||| Sbjct 54793 ATTCGCAATGCAGACCTTCATCTCGGCTAATGAGTTCATTTGAAAACGACAAACCAGGCA 54734 Query 14271 TCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCT 14330 | | |||| ||| |||||||| || || | ||| |||| ||| |||||| ||||| | Sbjct 54733 TGAGACCTCTTTTCTTTAACCAGAAGATCGAAGCAAATGCTCCACTAAAGAAAATTCCTT 54674 Query 14331 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATT 14390 | || |||||| || || | || |||| | | |||||||| |||||||| Sbjct 54673 CGACACAAGCAAATGCGATAACTCTGGTAGCAAAAGTAGATTTTTTGTCTTTTATCCATT 54614 Query 14391 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAAT 14450 | ||||| |||| || ||||||||| | ||||| | |||||||||| | || Sbjct 54613 TCAATGCCCAATCAGCCTTCTTTTTAATAGATGGTATTGTGTTTATAGCATTAAGAAGAT 54554 Query 14451 GTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGT 14510 | | || || | | | ||| || ||||| |||||||| |||||||||||| | Sbjct 54553 GATTTTTTTCGTCCGGATCACTAATATACGTATCTATAAGTAAAGAATACATTTCAGAAT 54494 Query 14511 GTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGT-ACC 14569 | || ||||| ||| ||| ||| || |||||||||||| | || ||| | || || || Sbjct 54493 GGATATTTTCGATAACTACCTGGAATCCATAAAAACATTTTGCCTCT-AAAATGGTGACT 54435 Query 14570 TCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAAT 14629 || | |||| ||||| | | ||| ||| || ||||||||| ||| || |||||| Sbjct 54434 TCCTCGGAAAACCTTTCAACAAGATTCATATTTACAATACCATCAGAAGCAGCGAAAAAT 54375 Query 14630 GCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTT------TTCCAATCG 14683 || | || | | || ||||||| || ||||| ||| || || |||||||| Sbjct 54374 GCAAGAATATGTGAAACAAAGTAT--CT-TTCAT--CTG-GTGTTAAAGAGTTCCAATCA 54321 Query 14684 GCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTA 14743 |||||| |||||||| ||||| ||| | ||||||||| | | |||| ||| Sbjct 54320 TATAAATCGGCTGAAAGATCAACTTCTTCAGCGGTCCAAAAAGAACATTCGGCTTGTTTG 54261 Query 14744 TACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTTG 14792 ||||| ||| || || | |||| ||||| |||| || ||||||| Sbjct 54260 TACATCTTCCAGATATCGTGATATTTAATAGGGAAAAGCACTAATCTTG 54212 >seq1673 Length=160240 Score = 293 bits (324), Expect = 2e-74 Identities = 605/889 (68%), Gaps = 22/889 (2%) Strand=Plus/Plus Query 13912 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13971 ||||||||| | | || |||| || |||||||| |||||||| | ||||| ||||| Sbjct 44700 TTTTTGATACTGAGATTCTTTTTTGTCGAAGAAGTTTGTTTTACCAACAAGTGAAATATT 44759 Query 13972 TTCCATAAAATCAAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAG 14031 |||||||||||| || ||||| | || | | | ||||| || || | || | Sbjct 44760 TTCCATAAAATCGAAAGGATTGGCTGTGTTGTAAATCTTATCTTCTCCAAGGTTTATCAA 44819 Query 14032 TAATCTATCCGCAATGAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 14091 |||||| || || | || |||||||| | |||| | | |||||||| || || || Sbjct 44820 TAATCTGTCGGCTACAAATTCAATATAATTGCACATAAGTTTGCAATTCATTCCAATAAG 44879 Query 14092 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 14151 || || || | | | |||||||||||| ||| || || ||||| | || Sbjct 44880 ATTAACTGGTAAACTTTCACTTAAAAATTCTTGTTCGATTTTTACTGCCTCAACAACGAT 44939 Query 14152 AATCGTAATAATTTCATTAGAAGGAG-GATATTTTAGATGTTTAAAAATTAAACACGCAA 14210 | || | | || | || | | |||| || | ||||| || ||| |||| Sbjct 44940 A-TCCT--TGATCTTATCGCATTTATTGATAAGATAACTATTTAACAA----ACAAGCAA 44992 Query 14211 AATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGCA 14270 | || ||||| || || ||||||| ||||||||||| |||||||| | || || |||| Sbjct 44993 ACTCGCAATGCAGACCTTCATCTCGGCTAATAAGTTCATTTGAAAACGACAAACCAGGCA 45052 Query 14271 TCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCCT 14330 | | |||| ||| |||||||| || || | ||| |||| ||| |||||| ||||| | Sbjct 45053 TGAGACCTCTTTTCTTTAACCAGAAGATCGAAGCAAATGCTCCACTAAAGAAAATTCCTT 45112 Query 14331 CAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCATT 14390 |||| |||||| || || | || |||| | | |||||| | ||||||| Sbjct 45113 CAACACAAGCAAATGCGATAACTCTGGTAGCAAAAGTAGATTTTTTATCTTTAATCCATT 45172 Query 14391 TTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAAT 14450 | |||||| |||| || ||||||||| | ||||| | |||||||||| | || Sbjct 45173 TCAAAGCCCAATCAGCCTTCTTTTTAATAGATGGTATTGTGTTTATAGCATTAAGAAGAT 45232 Query 14451 GTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAGT 14510 | | || || | | | ||| || ||||| |||||||| |||||||||||| | Sbjct 45233 GATTTTTTTCGTCCGGATCACTAATATACGTATCTATAAGTAAAGAATACATTTCAGAAT 45292 Query 14511 GTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGT-ACC 14569 | || ||||| ||| ||| ||| || |||||||||||| | || ||| | || || || Sbjct 45293 GGATATTTTCGATAACTACCTGGAATCCATAAAAACATTTTGCCTCT-AAAATGGTGACT 45351 Query 14570 TCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAAT 14629 || | |||| ||||| | | ||| ||| || ||||||||| ||| || |||||| Sbjct 45352 TCCTCGGAAAACCTTTCAACAAGATTCATATTTACAATACCATCAGAAGCAGCGAAAAAT 45411 Query 14630 GCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGCTGAGTTTT------TTCCAATCG 14683 || | || | | || ||||||| || ||||| ||| || || |||||||| Sbjct 45412 GCAAGAATATGTGAAACAAAGTAT--CT-TTCAT--CTG-GTGTTAAAGAATTCCAATCA 45465 Query 14684 GCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCAACAGCTTTTTTA 14743 |||||| |||||||| ||||| ||| | ||||||||| | | |||| ||| Sbjct 45466 TATAAATCGGCTGAAAGATCAACTTCTTCAGCGGTCCAAAAAGAACATTCGGCTTGTTTG 45525 Query 14744 TACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTTG 14792 ||||| ||| || || | |||| ||||| |||| || ||||||| Sbjct 45526 TACATCTTCCAGATATCGTGATATTTAATAGGGAAAAGCACTAATCTTG 45574 >seq4120 Length=16292344 Score = 136 bits (150), Expect = 4e-27 Identities = 158/210 (75%), Gaps = 5/210 (2%) Strand=Plus/Plus Query 14444 AATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14503 |||||| | |||| ||||||| | |||||| |||||||| || ||| ||||| Sbjct 7436382 AATAAACATACCTT-TCTTTAGGATCCCTAATGTAAGTATCAATCAGCAAGGAGTACATC 7436440 Query 14504 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCA- 14562 |||||||||| || |||||||| || || || |||||||| | || ||||| |||| Sbjct 7436441 TCAGAGTGTACATTCTCCATAGCAATTTGGAATCCATAAAAGAACCTTGCTTC--ACCAA 7436498 Query 14563 -TTGTACCTCTGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14621 ||| || ||| |||||| || | | ||| |||||||||||||||||| ||| | Sbjct 7436499 TTTGAACTTCTTGTGAAAATCGCTCTACTAGATTCTCATTAACTATACCATCAGAAGCAG 7436558 Query 14622 CAAAAAATGCCAATATGTTTTTAATAAAGT 14651 ||||||||||||| | | ||||||||||| Sbjct 7436559 CAAAAAATGCCAAAACATGTTTAATAAAGT 7436588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482312004628960