Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq4077 96.9 5e-15 seq1838 87.8 2e-12 seq769 87.8 2e-12 >seq4077 Length=533617 Score = 96.9 bits (106), Expect = 5e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 73886 TATTAAACTAGAAGAGGGGTGGATTGTTCATAGATATCTTCAAAATGGAGATATACTAGT 73945 ||| || |||||||||| | |||||| | ||| | | || |||||||||| | | Sbjct 213952 TATAAAGTTAGAAGAGGGTTATATTGTTGAGAGACACATGCAGAATGGAGATACTATTTT 214011 Query 73946 GCTAAATAGACAACCTACTTTACATAAAGCATCAATGATGGCTCTTCGAGTTAAAATTAT 74005 | ||| |||||||| || | |||||| || ||||||| || |||| | || Sbjct 214012 ATTTAATCGACAACCTTCTCTTCATAAAATGTCTATGATGGGTCACAAAGTTCGTGTGAT 214071 Query 74006 GGATGTAAAAACCTTTAAATTTAATCTTGCATG-CACTAAACCATATAATGCAGATTTTG 74064 ||| | || || ||| || ||| ||| || |||| || |||||||| ||||||| Sbjct 214072 GGAAGGGAAGACTTTTCGTTTAAAT-TTGAGTGTCACTTCTCCTTATAATGCCGATTTTG 214130 Query 74065 ATGGAGATGAAATGAATGCTCATGCGCCTCAA 74096 ||||||||||||||||| |||| ||| ||| Sbjct 214131 ATGGAGATGAAATGAATCTTCATATGCCACAA 214162 >seq1838 Length=309293 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 73886 TATTAAACTAGAAGAGGGGTGGATTGTTCATAGATATCTTCAAAATGGAGATATACTAGT 73945 ||| ||| |||||||||| | |||||| | || | | || |||||||| | | | Sbjct 89972 TATAAAATTAGAAGAGGGTTATATTGTTGAAAGGCACATGCAGAATGGAGACACTATTTT 90031 Query 73946 GCTAAATAGACAACCTACTTTACATAAAGCATCAATGATGGCTCTTCGAGTTAAAATTAT 74005 | ||| |||||||| || | |||||| || ||||||| | |||| | || Sbjct 90032 ATTTAATCGACAACCTTCTCTTCATAAAATGTCTATGATGGGCCACAAAGTTCGTGTGAT 90091 Query 74006 GGATGTAAAAACCTTTAAATTTAATCTTGCATG-CACTAAACCATATAATGCAGATTTTG 74064 ||| | || || ||| ||||| ||| || |||| || |||||||| ||||||| Sbjct 90092 GGAAGGGAAGAC-TTTCCGTTTAAATTTGAGTGTCACTTCTCCTTATAATGCCGATTTTG 90150 Query 74065 ATGGAGATGAAATGAATGCTCATGCGCCTCAA 74096 ||||||||||||||||| |||| ||| ||| Sbjct 90151 ATGGAGATGAAATGAATCTTCATATGCCACAA 90182 >seq769 Length=131207 Score = 87.8 bits (96), Expect = 2e-12 Identities = 148/212 (70%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 73886 TATTAAACTAGAAGAGGGGTGGATTGTTCATAGATATCTTCAAAATGGAGATATACTAGT 73945 ||| ||| |||||||||| | |||||| | || | | || |||||||| | | | Sbjct 73898 TATAAAATTAGAAGAGGGTTATATTGTTGAAAGGCACATGCAGAATGGAGACACTATTTT 73839 Query 73946 GCTAAATAGACAACCTACTTTACATAAAGCATCAATGATGGCTCTTCGAGTTAAAATTAT 74005 | ||| |||||||| || | |||||| || ||||||| | |||| | || Sbjct 73838 ATTTAATCGACAACCTTCTCTTCATAAAATGTCTATGATGGGCCACAAAGTTCGTGTGAT 73779 Query 74006 GGATGTAAAAACCTTTAAATTTAATCTTGCATG-CACTAAACCATATAATGCAGATTTTG 74064 ||| | || || ||| ||||| ||| || |||| || |||||||| ||||||| Sbjct 73778 GGAAGGGAAGAC-TTTCCGTTTAAATTTGAGTGTCACTTCTCCTTATAATGCCGATTTTG 73720 Query 74065 ATGGAGATGAAATGAATGCTCATGCGCCTCAA 74096 ||||||||||||||||| |||| ||| ||| Sbjct 73719 ATGGAGATGAAATGAATCTTCATATGCCACAA 73688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679767050927040