Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq3133 304 1e-77 seq2310 129 4e-25 seq1114 114 1e-20 seq5346 91.5 1e-13 seq2115 91.5 1e-13 >seq3133 Length=7630298 Score = 304 bits (336), Expect = 1e-77 Identities = 624/914 (68%), Gaps = 33/914 (4%) Strand=Plus/Minus Query 91054 TTATCACCTTTGTAATCAGACACGCCTGTCCAGCCGCGCCCGTACATGGCGACACCAATA 91113 |||| | ||| ||||| || || ||||||||||| |||||||| || ||||| | Sbjct 1022509 TTATTATCTTCGTAATTGTGGACACCGGTCCAGCCGCGTCCGTACATAGCTACACCCACC 1022450 Query 91114 ATTATTTTACTAGAATCAACACCTTGTTTTGTGAGCAT---TTGCACGGCATGATGCGTG 91170 | || || ||| | |||||||| | |||| || ||| || | || Sbjct 1022449 ACAATCTTCTTAGGGTTGACACCTTGA---GCAAGCAAATATTTCACACCAAAGTCAGTT 1022393 Query 91171 GTGTACAACTCGTTCGGGTTCCATTGCGGG-GCGTATAGTGTCGTTTGATAGCCCAAATC 91229 ||||| || || |||||||| ||||| ||||| || | || |||| || | Sbjct 1022392 GTGTAAGTTTCCTTAGGGTTCCAA-GCGGGAGCGTAAAGCGGAGTCTGATGACCGAG--- 1022337 Query 91230 GGTAT---TTGACCAAGCTCCTTTAAAATCGTAAGTCATGACATATATTTTACTCAAAAA 91286 ||||| | ||||| || ||||| || |||||| |||| | | || | || | Sbjct 1022336 GGTATCGTTAGACCAGGCGCCTTTGAAGTCGTAACTCATAAGGAAGATGTGGTCCATGTA 1022277 Query 91287 CTTTTGTGCAGCGTCA---TAATCGACAAGTTCGATCTTGTCATAACCGGCACCGATTGC 91343 ||| || ||| ||| |||||||||| || ||||| || | || |||| || || Sbjct 1022276 CTTCTG---AGCCTCACTGTAATCGACAACTTGAATCTTATCCCATCCAGCACTAATAGC 1022220 Query 91344 GCTTGTCAATTCGTACACTTTACCTGTTTGTGCTTGCAAA--TCATCCAACATGTCACGC 91401 |||| ||||| ||||| || | | | | ||| || | |||||| |||||| Sbjct 1022219 AGAGGTCAGCTCGTATTTCTTACCGGTCTCTTC--GGAAAGGTCGTTCAACATTTCACGC 1022162 Query 91402 AACTCTTTTAGCAAAACAATGTATGTAGCAGCGTCGCGTTTCGGATCGCCAATGGCCGGA 91461 || || || | || ||| ||| | | |||| || ||| ||||| | | ||| Sbjct 1022161 AATTCCTTCATTAATTCAACGTAAACATCTCCGTCC---TTGGGACTGCCAAGGTCTGGA 1022105 Query 91462 TTAGCGCCTTTACCGCCCGGAAATTCCCAATCAATATCTACACCGTCAAAAAATTTCCAA 91521 ||||| || |||||||| || ||||||||||| |||||||||||||| || || ||||| Sbjct 1022104 TTAGCTCCCTTACCGCCAGGGAATTCCCAATCGATATCTACACCGTCGAAGAACTTCCAT 1022045 Query 91522 ACTTGCAAAAATTCTTTAACCGAATCAACGAAC--ACGTTTCTTCG-TTTGACATCGTGC 91578 || | || ||||| || ||||| ||||| | | ||||| |||| | ||| Sbjct 1022044 GTCTGAAGGAAATCTTTCACAGAATCCACGAAGCGATCTCTCTTCTCTTTGTCT--GTGA 1021987 Query 91579 ATAAAATAGAACGGGTCCGACAAAGTCCAGCCACCGATGGACGGTAAAACTTTTAAATGC 91638 | || | |||| || || | | |||||||||||||||||| |||| | ||| | | Sbjct 1021986 AGAAGA-AGAAGGGATCTGCAAGAGTCCAGCCACCGATGGAAGGTAGGATTTTAAGGTCA 1021928 Query 91639 GGGTTGGCCAACTTGGCGGCCATTATCTGACCAAAGTTGCCCTTGTAAGGCTCGTTCCAA 91698 || |||| || | ||| | ||||||||||||||| ||||| ||||| ||||| Sbjct 1021927 GGCCTGGCTTGTTTAAGAGACATCAGCTGACCAAAGTTGCCTTTGTATGGCTCATTCCAG 1021868 Query 91699 GCGGATACACCTTTTTGTGGTTTTTGTATGGCTGCCCACGGATCGTGTATGGAAACTTTA 91758 | || | ||| |||||||| || || | || |||||||||||||| || |||||||| Sbjct 1021867 GAAGAAAGACCCTTTTGTGGCTTCTGAAGAGCAGCCCACGGATCGTGAATTGAAACTTTG 1021808 Query 91759 AAATCATCGCGTCCTTTGCACGATCGTTGCAAATTTTCAAAACTACCAGGTATTGTTTTG 91818 ||||| ||||| || |||| |||||||| | | || ||||| || ||| || Sbjct 1021807 AAATCTTCGCGGCCGCTGCATGATCGTTGAAGAGCTTGGAAACTGCCTTCGATTTCCTTC 1021748 Query 91819 AGGGCATCGTTTAATCCATCGCCTCCGCAAATGGGTATAAAACCGTACAACAGATGGGAC 91878 | ||||| | ||||||||||||||||| || |||||||||||||| ||||| | | Sbjct 1021747 AAACTGTCGTTGATGCCATCGCCTCCGCAAATTGGAATAAAACCGTACAAAAGATGAGTC 1021688 Query 91879 AAATTTGGCAGCGGCACCTTGTCGATTGGAAAGTTGCGTCCGTACACGCCCCATTCAACA 91938 | ||| || | || || || | || || || | | ||| || ||||||||||| Sbjct 1021687 AGATTAGGAATTGGTACACGATCAACAGGGAATTTTCTTGGGTAGACACCCCATTCAACG 1021628 Query 91939 AAGTACGCGGCGAC 91952 |||||||| |||| Sbjct 1021627 AAGTACGCTCCGAC 1021614 Score = 84.2 bits (92), Expect = 2e-11 Identities = 96/129 (74%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 20411 AAAGGACAATGCGGTGCCCATTTTTGGTGATCTTTCGCCGGGTCGTCGCCTTCTTGCCAA 20470 || || || ||||| ||||| ||||| || ||||| ||||||||||| || ||| Sbjct 2611530 AAGGGGCATTGCGGGGCCCAGCGCTGGTGGTCCTTCGCGGGGTCGTCGCCCTCCACCCAG 2611471 Query 20471 TGCATAATTTCCACTTTGCAAAACGCACAGCGCACTTCGTCAGCGCGCCCCAAATAATAG 20530 |||| ||||| ||||| || || || ||||| || ||||| |||| || | || ||| Sbjct 2611470 CGCATGATTTCGACTTTACAGAAGGCGCAGCGGACCTCGTCGCCGCGGCCGAGGTAGTAG 2611411 Query 20531 AACCCGTTG 20539 || |||||| Sbjct 2611410 AAGCCGTTG 2611402 >seq2310 Length=6428792 Score = 129 bits (142), Expect = 4e-25 Identities = 158/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||||| ||||||||| ||||| || || ||||||||||| | || |||| | ||| Sbjct 5745031 AGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAATGTTCGCCCGTCT 5744972 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| |||||||| ||| |||| | ||| || || || ||| | ||||||||| || Sbjct 5744971 TCCAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCT 5744912 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 |||| |||| ||||| | | ||| |||||| ||| || ||| | |||||| | Sbjct 5744911 TGGATTT-TTGCTTTGACATTTTCAATTGTGTCAGAGGGTTCCACTTCTAATGTGATGGT 5744853 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||| ||||| || || ||||| || ||||| Sbjct 5744852 TTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5744820 Score = 125 bits (138), Expect = 5e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||||| ||||||||| ||||| || || ||||||||||| | || |||| | ||| Sbjct 5745259 AGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAATGTTCGTCCGTCT 5745200 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| || ||||| ||| |||| | ||| || || || ||| | ||||||||| || Sbjct 5745199 TCCAGCTGCTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTCT 5745140 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 |||| |||| ||||| | | ||| |||||| ||| || ||| | |||||| | Sbjct 5745139 TGGATTT-TTGCTTTGACATTTTCAATTGTGTCAGAGGGTTCCACTTCTAATGTGATGGT 5745081 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||||| ||||| || || ||||| || ||||| Sbjct 5745080 TTTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5745048 Score = 109 bits (120), Expect = 4e-19 Identities = 153/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||||| ||||||||| ||||| || || ||||||||||| | || ||| | |||| Sbjct 5744803 AGTACCAAGTGAAGTGTGGATTCCTTCTGGATGTTGTAGTCAGACAATGTGCGTCCATCT 5744744 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 |||| |||||||| ||| |||| | ||| || || || ||| | ||| || || || Sbjct 5744743 TCCAGCTGTTTGCCGGCAAAGATCAATCTCTGCTGGTCTGGGGGGATGCCCTCTTTGTCT 5744684 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||| | ||| || | | ||| ||||| ||||| || | ||||||| | Sbjct 5744683 TGAATCTTGGCCTTAACATTTTCAATTGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTC 5744624 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| ||||| || || |||||||| ||||| || Sbjct 5744623 TTGCCCGTCAAGGTCTTCACAAAAATCTGCATCTT 5744589 Score = 98.7 bits (108), Expect = 8e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||||| ||| ||||| ||||| || ||||||||||| |||| | ||| || |||| Sbjct 5746627 AGTACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGAGAGTGTACGACCATCT 5746568 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | |||||||| || |||| || | ||| || || || | |||||||| || Sbjct 5746567 TCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGAGGGATACCTTCCTTGTCT 5746508 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||||| | || || || | ||| ||||| ||| || |||| ||||||| | Sbjct 5746507 TGAATTT-TGGCTTTAACATTCTCAATGGTGTCTGAGGGTTCCACCTCAAGGGTGATGGT 5746449 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||| || || ||||| || ||||| Sbjct 5746448 CTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 5746416 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||||| ||| || || || |||||||| ||||||||||| | | ||| | ||| Sbjct 5746855 AGTACCAAGTGGAGGGTGGACTCTTTTTGGATGTTGTAGTCAGAGAGTGTACGTCCATCC 5746796 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | |||||||| || |||| | ||| || || || ||| | |||||||||||| Sbjct 5746795 TCTAGCTGTTTGCCGGCGAAGATCAATCTCTGCTGGTCTGGGGGGATGCCTTCCTTATCT 5746736 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 || | ||| || | | | |||||| || ||| ||| | ||| ||| || Sbjct 5746735 TGGATCTTGGCCTTAACATTCTCGATGGTGTCAGAAGGTTCGACTTCTAAGGTAATGGTT 5746676 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| ||||| || || ||||| || ||||| Sbjct 5746675 TTGCCAGTCAAGGTCTTGACAAAGATCTGCAT 5746644 Score = 82.4 bits (90), Expect = 6e-11 Identities = 148/214 (69%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||||| ||| ||||| ||||| || ||||||||||| |||| | ||| || |||| Sbjct 5745943 AGTACCAAGTGGAGTGTGGATTCCTTCTGAATGTTGTAATCGGAGAGTGTACGACCATCT 5745884 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | |||||||| || |||| || | ||| || || ||| | |||||||| || Sbjct 5745883 TCTAGCTGTTTGCCGGCGAAGATGAGACGTTGCTGGTCTGGGGGGATACCTTCCTTGTCT 5745824 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | | || || || | | | |||||| ||| || || | ||||||| | Sbjct 5745823 TGGATCT-TGGCTTTAACATTCTCGATGGTGTCAGAGGGTTCCACCTCGAGGGTGATGGT 5745765 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || || || || || || ||||| || |||||| Sbjct 5745764 CTTTCCTGTTAAGGTCTTCACAAAGATCTGCATT 5745731 >seq1114 Length=8361563 Score = 114 bits (126), Expect = 1e-20 Identities = 169/237 (71%), Gaps = 2/237 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || || | |||| ||||||||| ||||| || || ||||||||||||| | Sbjct 2710521 CCTCCTCGAAGCCTCAACACCAAGTGAAGTGTCGATTCCTTCTGGATGTTGTAGTCGGAC 2710462 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | ||||||||| |||||||| || |||| | |||||| ||||| || Sbjct 2710461 AATGTACGTCCATCTTCCAACTGTTTGCCGGCGAAGATCAATCTTTGCTGATCTGGTGGA 2710402 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||| || || || ||||| | || || || | | | | ||||||| || || Sbjct 2710401 ATGCCCTCTTTGTCTTGAATTT-TCGCTTTTACATTTTCGATAGTGTCAGAGGCTTCAAC 2710343 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAACT 18334 || | || ||| |||| || || | |||||||| || || |||||| ||||||| Sbjct 2710342 CTCTAACGTTATGGTTTTACCCGTAAGGGTTTTTACGAAGATCTGCATTGTTAAACT 2710286 >seq5346 Length=541963 Score = 91.5 bits (100), Expect = 1e-13 Identities = 172/249 (69%), Gaps = 3/249 (1%) Strand=Plus/Minus Query 18078 AATACATTTTCTTTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCT 18137 ||||| ||||| || ||| ||||| | || ||| | |||| || ||||| |||| Sbjct 231483 AATACGAGTTCTTCTTCTTA-CCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCT 231425 Query 18138 TTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATA 18197 |||||||| || || |||| | || || |||||||||||||| || ||| | ||| Sbjct 231424 TTTTGAATATTATAATCGGATAAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATA 231365 Query 18198 AGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGC 18256 ||||| ||||| || || | ||||| ||||| || | | || || || | | Sbjct 231364 AGTCTCTGTTGGTCTGGAGGGATTCCTTCTTTATCTTGGATCT-TGGCTTTTACATTCTC 231306 Query 18257 AACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAA 18316 || ||| ||| || || ||| | ||||| | || || || ||||| |||||||| Sbjct 231305 AATAGTATCAGAAGGTTCTACTTCCAAAGTGATTGTCTTTCCTGTTAATGTCTTTACAAA 231246 Query 18317 AATTTGCAT 18325 ||| ||||| Sbjct 231245 AATCTGCAT 231237 >seq2115 Length=629047 Score = 91.5 bits (100), Expect = 1e-13 Identities = 172/249 (69%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 18078 AATACATTTTCTTTTTGTTATCCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCT 18137 ||||| ||||| || ||| ||||| | || ||| | |||| || ||||| |||| Sbjct 360761 AATACGAGTTCTTCTTCTTA-CCTCCTCTTAATCTTAAAACCAAATGTAGTGTACTTTCT 360819 Query 18138 TTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATA 18197 |||||||| || || |||| | || || |||||||||||||| || ||| | ||| Sbjct 360820 TTTTGAATATTATAATCGGATAAAGTCCTATTGTCTTCCAATTGTTTACCAGCAAATATA 360879 Query 18198 AGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGC 18256 ||||| ||||| || || | ||||| ||||| || | | || || || | | Sbjct 360880 AGTCTCTGTTGGTCTGGAGGGATTCCTTCTTTATCTTGGATCT-TGGCTTTTACATTCTC 360938 Query 18257 AACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAA 18316 || ||| ||| || || ||| | ||||| | || || || ||||| |||||||| Sbjct 360939 AATAGTATCAGAAGGTTCTACTTCCAAAGTGATTGTCTTTCCTGTTAATGTCTTTACAAA 360998 Query 18317 AATTTGCAT 18325 ||| ||||| Sbjct 360999 AATCTGCAT 361007 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379318239223140