Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_003094.2 Length=130759 Score E Sequences producing significant alignments: (Bits) Value seq3133 269 2e-67 seq2310 89.7 4e-13 >seq3133 Length=7630298 Score = 269 bits (298), Expect = 2e-67 Identities = 743/1120 (66%), Gaps = 33/1120 (3%) Strand=Plus/Minus Query 35666 CCAATATGCATAGCGTTGAGCAAATCGCCGTTGTCCGCATCGATTTCCCATGCGAATAAT 35725 || || | ||| ||||| | | || || ||||| ||||| || ||||| |||||||| Sbjct 1022800 CCCATGTTCATGGCGTTTAATAGTTCACCATTGTCTGCATCAATCTCCCACGCGAATAAA 1022741 Query 35726 CCGCCGAGTCTACGCTGAAGCACGTATTCGCCTTTGGCCAGTACCGATCTTTCGCTGTCA 35785 ||||| || || | ||| || | |||||| | | ||||| | || Sbjct 1022740 CCGCCCAGCTTATTGTTTCTCACATACTTGCCTTTCTCAATAGTCGATCGAGGATTATCG 1022681 Query 35786 TACGATATTAAGTCGCCAGAGGCGCGGTCGAATACGTACGCAGCCTTGGCCACGTCGTCG 35845 |||| ||||||||| |||| | | ||| ||||| | ||| | ||| |||| || Sbjct 1022680 TACGTTATTAAGTCACCAGTCGATGGCCTGAACACGTAAGGAGCTTCGGCAACGTTATCA 1022621 Query 35846 -AATG-------CGTATTCGTAACGCGAAATGTTTTTAGCAATCTGTCTGTAGTCGACCA 35897 |||| | | | | | |||| | ||| || || | |||||| || || | Sbjct 1022620 TAATGGAACTCCCATTTCCCCATAGCGATTTCATTT--GCTATTTCTCTGTAATCAACTA 1022563 Query 35898 CGCCGTTTTCCCATGTACCCGTGATCGGTCCGACGGCTACGCCACTGAATGGATTGTCAC 35957 | |||| || ||| ||||| ||| ||||| || ||| |||| ||||| | | Sbjct 1022562 CACCGTCTTGCCAAGTACCTTTGACAGGTCCTGTCGCGTTGCCTGTGAAGGGATTATTAT 1022503 Query 35958 TGTTGTAGTTGTGGACGCCCGTCCAACCGCGGCCGTACATTGCTACGCCCAACACGAGtt 36017 | ||| |||||||| || ||||| ||||| |||||||| ||||| |||| ||| | | Sbjct 1022502 CTTCGTAATTGTGGACACCGGTCCAGCCGCGTCCGTACATAGCTACACCCACCACAATCT 1022443 Query 36018 tttttGGATTCACTCGTTGCGCGAGCAAAGCGTCCACGGCCACGTTGGCGGTGTACGGTT 36077 | || || || || | ||| || |||||| | ||| | | || | ||||| | || Sbjct 1022442 TCTTAGGGTTGACACCTTGAGCAAGCAAATATTTCACACCAAAGTCAGTTGTGTAAGTTT 1022383 Query 36078 CGTTAGGTTTCCACGCGGAACCGTACAGTGCCGTCTGATGACCGAG---ATCGGTATTAG 36134 | ||||| ||||| |||| | |||| || | |||||||||||||| |||| |||| Sbjct 1022382 CCTTAGGGTTCCAAGCGGGAGCGTAAAGCGGAGTCTGATGACCGAGGGTATCG---TTAG 1022326 Query 36135 ACCAAGCTCCTTTGAAATCATAACTCATCACGAAAATTTTATCTAAATACTGTTGTG-CT 36193 |||| || |||||||| || |||||||| | ||| || | || | |||| || | || Sbjct 1022325 ACCAGGCGCCTTTGAAGTCGTAACTCATAAGGAAGATGTGGTCCATGTACTTCTGAGCCT 1022266 Query 36194 CGGTCGTAATTAACCGCGGCGATCTTGTCTATGCCAGCGCTAATCGCTGTGGTGAGTTCT 36253 | | ||||| || | ||||| || ||||| ||||| || | ||| || || Sbjct 1022265 CACT-GTAATCGACAACTTGAATCTTATCCCATCCAGCACTAATAGCAGAGGTCAGCTCG 1022207 Query 36254 AAAGTACGATTCGTTTGTATTTGAA--CTTGATCGAGCATGGCGCGCAATTCGCCCAATA 36311 | | | || | | | ||| | | || | ||| | |||||||| || || Sbjct 1022206 TATTTCTTACCGGTCTCT-TCGGAAAGGTCGTTC-AACATTTCACGCAATTCCTTCATTA 1022149 Query 36312 AAGCGA--TATACGTGTTATTGTCGCGTTCCACATCGCCAACGTTTGGATTGGCGCCTTT 36369 | | | || || | | ||| | | || ||||| || |||||| || || || Sbjct 1022148 ATTCAACGTAAACATCT--CCGTC-CTTGGGAC--TGCCAAGGTCTGGATTAGCTCCCTT 1022094 Query 36370 GCCGCCCGGAAATTCCCAATCAATATCGATGCCGTCGAAAAATTTCCATGTCAACACAAA 36429 ||||| || ||||||||||| ||||| | |||||||| || ||||||||| | || Sbjct 1022093 ACCGCCAGGGAATTCCCAATCGATATCTACACCGTCGAAGAACTTCCATGTCTGAAGGAA 1022034 Query 36430 TTCACGCACGGATTCGACAAAAATTTGTCGCGTTCGC-GCATC-GTGCATATGATAGAAG 36487 || ||| || || || || | || | ||| | || ||| | | || ||||| Sbjct 1022033 ATCTTTCACAGAATCCACGAAGCGATCTCTC-TTCTCTTTGTCTGTGAAGAAGA-AGAAG 1021976 Query 36488 GGATCGGACAGTGTCCAACCGCCGATTGATGCCAACACTTTTAGATTGGGATTGGCCAAT 36547 ||||| | || ||||| || ||||| || | | | ||| || | || |||| | Sbjct 1021975 GGATCTGCAAGAGTCCAGCCACCGATGGAAGGTAGGATTTTAAGGTCAGGCCTGGCTTGT 1021916 Query 36548 TTTGCTGCCATTAATTGACCAAAATTGCCTTTGTAGGGTTCGTTCCATGCGCTAACGCCT 36607 || | ||| | |||||||| ||||||||||| || || ||||| | || || Sbjct 1021915 TTAAGAGACATCAGCTGACCAAAGTTGCCTTTGTATGGCTCATTCCAGGAAGAAAGACCC 1021856 Query 36608 GTTTGTGGTTTTTGGAGCGCCGCCCACGGATCGTGTATGGAAACTTTAAAATTGTCCCTG 36667 ||||||| || || || || |||||||||||||| || |||||||| |||| || | | Sbjct 1021855 TTTTGTGGCTTCTGAAGAGCAGCCCACGGATCGTGAATTGAAACTTTGAAATCTTCGCGG 1021796 Query 36668 CCAGCGCACGATCTTTGCAACGCTTCAAAACTCCCCGTGATAGATTTTAAACTGTCGTTT 36727 || ||| |||| ||| | |||| ||||| || ||| || ||||||||||| Sbjct 1021795 CCGCTGCATGATCGTTGAAGAGCTTGGAAACTGCCTTCGATTTCCTTCAAACTGTCGTTG 1021736 Query 36728 ATACCGTCACCGCCGCAAATCGGTATAAATCCGTATAAAA 36767 || || || || |||||||| || ||||| ||||| |||| Sbjct 1021735 ATGCCATCGCCTCCGCAAATTGGAATAAAACCGTACAAAA 1021696 >seq2310 Length=6428792 Score = 89.7 bits (98), Expect = 4e-13 Identities = 159/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| |||||||| |||||||| || || || || || |||| || ||| | | Sbjct 5746188 ATGCAGATCTTTGTTAAGACCTTAACGGGAAAGACCATCACTCTCGAAGTGGAACCCTCC 5746247 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | || | |||||| | || || | || ||||| | || |||||| Sbjct 5746248 GACACCATCGAGAATGTTAAAGCCAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAG 5746307 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGAT--TCCATGACTATGAACGATTACA 25009 |||||| | || | || |||||||| || |||||| || ||| | |||||| | Sbjct 5746308 CAACGTCTCATCTTCGCCGGCAAACAGCTAGAAGATGGTCGTACACTCT--CCGATTATA 5746365 Query 25010 GCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 || || |||||| |||| || || || |||||||| |||| || ||| Sbjct 5746366 ATATCCAAAAAGAGTCCACCCTCCACTTGGTGTTACGTCTGCGAGGTGGT 5746415 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| ||||| || |||||||| || || || || ||| |||| || ||| | Sbjct 5745732 ATGCAGATCTTTGTGAAGACCTTAACAGGAAAGACCATCACCCTCGAGGTGGAACCCTCT 5745791 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | || | |||||| | || || | || ||||| | || |||||| Sbjct 5745792 GACACCATCGAGAATGTTAAAGCCAAGATCCAAGACAAGGAAGGTATCCCCCCAGACCAG 5745851 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGAT--TCCATGACTATGAACGATTACA 25009 |||||| | || | || |||||||| || |||||| || ||| | |||||||| Sbjct 5745852 CAACGTCTCATCTTCGCCGGCAAACAGCTAGAAGATGGTCGTACACTCT--CCGATTACA 5745909 Query 25010 GCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 ||| ||||| || |||| || || || || |||| ||||| || ||| Sbjct 5745910 ACATTCAGAAGGAATCCACACTCCACTTGGTACTACGTTTGCGAGGTGGT 5745959 Score = 86.0 bits (94), Expect = 5e-12 Identities = 158/230 (69%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 24832 ATGCAGATATTTGTTAAAACCTTAACCGGCAAAACGATAACCGTCGATGTCGAATCGAGC 24891 |||||||| ||||| || ||||| || ||||| || || ||| | || || ||| | Sbjct 5746416 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTGGAACCCTCA 5746475 Query 24892 GACAGTGTAGAAACTGTTAAGGAAAAAATTGCTGCAAAAGAAGGCGTACCGGTTGACCAG 24951 |||| | || | |||||| | |||||| | || ||||| | || |||||| Sbjct 5746476 GACACCATTGAGAATGTTAAAGCCAAAATTCAAGACAAGGAAGGTATCCCTCCAGACCAG 5746535 Query 24952 CAACGTTTAATATATGCGGGCAAACAACTGGAAGAT--TCCATGACTATGAACGATTACA 25009 |||||| | || | || |||||||| || |||||| || ||| | |||||||| Sbjct 5746536 CAACGTCTCATCTTCGCCGGCAAACAGCTAGAAGATGGTCGTACACTCT--CCGATTACA 5746593 Query 25010 GCATACAGAAAGAGGCCACGCTTCATTTAGTGTTACGATTGCGCGGAGGT 25059 ||| ||||| || |||| || || || || |||| |||| || ||| Sbjct 5746594 ACATTCAGAAGGAATCCACACTCCACTTGGTACTACGTCTGCGAGGTGGT 5746643 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 418275593498240