Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq1390 129 1e-24 seq1673 114 3e-20 seq3951 96.9 7e-15 seq4120 86.0 1e-11 >seq1390 Length=76047 Score = 129 bits (142), Expect = 1e-24 Identities = 297/442 (67%), Gaps = 23/442 (5%) Strand=Plus/Plus Query 101921 GCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATC 101980 || |||||| || |||||||| ||||||||||| ||||| || || || |||||| | Sbjct 54658 GCATTTGCTTGTGTCGAAGGAATTTTCTTTAGTGGAGCATTTGCTTCGATCTTCTGGTTA 54717 Query 101981 AAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAA 102040 ||||| || ||| | |||||||| | | | || ||||| ||||| | || ||| Sbjct 54718 AAGAAAAGAGGTCTCATGCCTGGTTTGTCGTTTTCAAATGAACTCATTAGCCGAGATGAA 54777 Query 102041 GGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCATCA 102100 ||||| ||| |||| ||||| || ||| ||| ||| | || || | || | Sbjct 54778 GGTCTGCATTGCGAATTTGCTTG------TTTGTTAAATAGTTATCTT-AT---CAATAA 54827 Query 102101 A-GAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTT----C 102155 | | || | ||| || ||||| ||| || || ||| |||||||||||| Sbjct 54828 ATGCGATAAGATCAAGGATATTGTTGTTGAGGCAGTAAAAATCGAACAAGAATTTTTAAG 54887 Query 102156 TCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACA 102215 | | |||| | |||||||| | | |||||||| ||||| | ||| || | || | Sbjct 54888 TGAAAGTT----TACCTGTTAATCTTATTGGAATGAATTGCAAACTTATGTGCAATTATA 54943 Query 102216 TTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTA 102275 |||||||||| || || | | ||||| | | | || ||| ||| || || Sbjct 54944 TTGAATTTGTAGCCGACAGATTATTGATAAACCTTGGGGAAGATAAGATTTACAACACAG 55003 Query 102276 CCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTG--A 102333 |||| || ||| |||||||| |||||||| || | ||| || ||||| |||| | Sbjct 55004 CCAATCCTTTCGATTTCATGGAAAATATTTCACTTGTTGGTAAAACAAACTTCTTTGACA 55063 Query 102334 AAAGAGAGTCGCCGAGTATCAA 102355 ||| ||| || | |||||||| Sbjct 55064 AAAAAGAATCTC--AGTATCAA 55083 >seq1673 Length=160240 Score = 114 bits (126), Expect = 3e-20 Identities = 294/442 (67%), Gaps = 23/442 (5%) Strand=Plus/Minus Query 101921 GCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATC 101980 || |||||| ||||||||||| ||||||||||| ||||| || || || |||||| | Sbjct 45128 GCATTTGCTTGTGTTGAAGGAATTTTCTTTAGTGGAGCATTTGCTTCGATCTTCTGGTTA 45069 Query 101981 AAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAA 102040 ||||| || ||| | |||||||| | | | || ||||| | ||| | || ||| Sbjct 45068 AAGAAAAGAGGTCTCATGCCTGGTTTGTCGTTTTCAAATGAACTTATTAGCCGAGATGAA 45009 Query 102041 GGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCATCA 102100 ||||| ||| |||| ||||| || ||| ||| ||| | || || | || | Sbjct 45008 GGTCTGCATTGCGAGTTTGCTTG------TTTGTTAAATAGTTATCTT-AT---CAATAA 44959 Query 102101 A-GAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTT----C 102155 | | || | ||| || || || ||| || || ||| |||||||||||| Sbjct 44958 ATGCGATAAGATCAAGGATATCGTTGTTGAGGCAGTAAAAATCGAACAAGAATTTTTAAG 44899 Query 102156 TCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACA 102215 | | |||| | || ||||| | | |||||||| ||||| | ||| || | || | Sbjct 44898 TGAAAGTT----TACCAGTTAATCTTATTGGAATGAATTGCAAACTTATGTGCAATTATA 44843 Query 102216 TTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTA 102275 |||||||||| || || | | ||||| | | | ||| ||| ||| || || Sbjct 44842 TTGAATTTGTAGCCGACAGATTATTGATAAACCTTGGAGAAGATAAGATTTACAACACAG 44783 Query 102276 CCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTG--A 102333 |||| || ||| || ||||| |||||||| || | ||| || ||||| || | | Sbjct 44782 CCAATCCTTTCGATTTTATGGAAAATATTTCACTTGTTGGTAAAACAAACTTCTTCGACA 44723 Query 102334 AAAGAGAGTCGCCGAGTATCAA 102355 ||| ||| || | |||||||| Sbjct 44722 AAAAAGAATCTC--AGTATCAA 44703 >seq3951 Length=6844153 Score = 96.9 bits (106), Expect = 7e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 35516 AGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCAC 35575 ||| | ||||||| || || |||||||| ||| ||||||||||| ||||| Sbjct 4102234 AGAAATAATCCAGCCGACAGGAGGATGATAATGTGTGCATGGAATCCGTCAGATCTCAGT 4102175 Query 35576 CTTATGGCTCTTCCTCCATGCCACATGACT-GCTCAATTTTATGTGGCTAATGGAGAATT 35634 | |||||||| ||||| || || || || | ||| || |||||||||||||| |||| Sbjct 4102174 CAAATGGCTCTACCTCCTTGTCAT-TGTCTTGTTCAGTTCCATGTGGCTAATGGAAAATT 4102116 Query 35635 GTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 | ||| ||||||| | || | |||| | ||| |||||||||| || || ||||| Sbjct 4102115 GAATTGCTTAATGTATCAAAGGAGTGCAGATATGGGGCTGGGCGTGCCATTTAACATTGC 4102056 Query 35695 ATCATACTCTCTTCTGACTCATCTGATGGC 35724 || || ||| |||| || |||| || Sbjct 4102055 CAGCTATTCGCTTTTGACACACATGATTGC 4102026 >seq4120 Length=16292344 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 101915 ATTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTC 101974 || |||||||||||||| || || || ||||||||| ||| || || || || ||| Sbjct 7436133 ATAGTTGCCTTTGCTGCTGTGGAGGGCATCTTCTTTTCTGGAAGCTTTGCGTCAATATTC 7436074 Query 101975 TGGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGG 102034 ||| | ||||| | || | |||||||||| |||| | ||||||| | ||||||||| Sbjct 7436073 TGGTTGAAGAAGCGTGGCTTAATGCCTGGTCTGACCTTCAGCAATGAGCTGATTTCTAGG 7436014 Query 102035 GACGA 102039 || || Sbjct 7436013 GATGA 7436009 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989513352361260