Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq1390 300 2e-76 seq1673 295 6e-75 seq4120 152 5e-32 seq3143 102 8e-17 >seq1390 Length=76047 Score = 300 bits (332), Expect = 2e-76 Identities = 616/908 (68%), Gaps = 32/908 (4%) Strand=Plus/Minus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 ||||||||| | | || |||| ||||||||||| |||||||| | ||||| ||||| Sbjct 55086 TTTTTGATACTGAGATTCTTTTTTGTCAAAGAAGTTTGTTTTACCAACAAGTGAAATATT 55027 Query 13640 TTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAG 13699 |||||| ||||| || ||||| || | | | ||||| || || | || | Sbjct 55026 TTCCATGAAATCGAAAGGATTGGCTGTGTTGTAAATCTTATCTTCCCCAAGGTTTATCAA 54967 Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759 |||||| || || | ||| |||||||| | |||| | | |||||||| || || || Sbjct 54966 TAATCTGTCGGCTACAAATTCAATATAATTGCACATAAGTTTGCAATTCATTCCAATAAG 54907 Query 13760 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819 || ||||| | | | |||||||||||| ||| || || ||||| | ||| Sbjct 54906 ATTAACAGGTAAACTTTCACTTAAAAATTCTTGTTCGATTTTTACTGCCTCAACAACAAT 54847 Query 13820 AA--TTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 13877 | ||| | ||| |||| | ||| || | ||||| || ||| ||| Sbjct 54846 ATCCTTGATCTTATCGCATTTATTG----ATAAGATAACTATTTAACAA----ACAAGCA 54795 Query 13878 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13937 || || ||||| || || ||||||| ||||| ||||| |||||||| | || || ||| Sbjct 54794 AATTCGCAATGCAGACCTTCATCTCGGCTAATGAGTTCATTTGAAAACGACAAACCAGGC 54735 Query 13938 ATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCC 13997 || | |||| ||| |||||||| || || | |||||||| || |||||| ||||| Sbjct 54734 ATGAGACCTCTTTTCTTTAACCAGAAGATCGAAGCAAATGCTCCACTAAAGAAAATTCCT 54675 Query 13998 TCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCAT 14057 || || |||||| || || | || |||| | | |||||||| ||||||| Sbjct 54674 TCGACACAAGCAAATGCGATAACTCTGGTAGCAAAAGTAGATTTTTTGTCTTTTATCCAT 54615 Query 14058 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14117 || ||||| |||| || ||||||||| | ||||| | |||||||||| | | Sbjct 54614 TTCAATGCCCAATCAGCCTTCTTTTTAATAGATGGTATTGTGTTTATAGCATTAAGAAGA 54555 Query 14118 TATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 14177 | | || || | | | ||| || ||||| |||||||| |||||||||||| Sbjct 54554 TGATTTTTTTCGTCCGGATCACTAATATACGTATCTATAAGTAAAGAATACATTTCAGAA 54495 Query 14178 TGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGT-AC 14236 || || ||||| ||| ||| ||| || |||||||| ||| | || | | | || || || Sbjct 54494 TGGATATTTTCGATAACTACCTGGAATCCATAAAAACATTTTGCCT-CTAAAATGGTGAC 54436 Query 14237 TTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14296 |||| | |||| ||||| | | ||| ||| || ||||||||| ||| || ||||| Sbjct 54435 TTCCTCGGAAAACCTTTCAACAAGATTCATATTTACAATACCATCAGAAGCAGCGAAAAA 54376 Query 14297 TGCCAATATGTTTTTAATAAAGTATTGCTCTTCAT----TGTT---GAGTTTTTTCCAAT 14349 ||| | || | | || ||||||| || ||||| |||| ||| ||||||| Sbjct 54375 TGCAAGAATATGTGAAACAAAGTAT--CT-TTCATCTGGTGTTAAAGAG----TTCCAAT 54323 Query 14350 CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTT 14409 | ||||||| |||||||| ||||| ||| | ||||||||| | | |||| || Sbjct 54322 CATATAAATCGGCTGAAAGATCAACTTCTTCAGCGGTCCAAAAAGAACATTCGGCTTGTT 54263 Query 14410 TATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTCGAAGATGTTT 14469 | ||||| ||| || || | |||| ||||| |||| || ||||| ||||| Sbjct 54262 TGTACATCTTCCAGATATCGTGATATTTAATAGGGAAAAGCACTAATCT------TGTTT 54209 Query 14470 CTTTAAGA 14477 ||||| || Sbjct 54208 CTTTAGGA 54201 >seq1673 Length=160240 Score = 295 bits (326), Expect = 6e-75 Identities = 613/904 (68%), Gaps = 24/904 (3%) Strand=Plus/Plus Query 13580 TTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCTTCCAGTGATATATT 13639 ||||||||| | | || |||| || |||||||| |||||||| | ||||| ||||| Sbjct 44700 TTTTTGATACTGAGATTCTTTTTTGTCGAAGAAGTTTGTTTTACCAACAAGTGAAATATT 44759 Query 13640 TTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATCACAACCTAGTTCTAATAG 13699 |||||||||||| || ||||| || | | | ||||| || || | || | Sbjct 44760 TTCCATAAAATCGAAAGGATTGGCTGTGTTGTAAATCTTATCTTCTCCAAGGTTTATCAA 44819 Query 13700 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13759 |||||| || || | ||| |||||||| | |||| | | |||||||| || || || Sbjct 44820 TAATCTGTCGGCTACAAATTCAATATAATTGCACATAAGTTTGCAATTCATTCCAATAAG 44879 Query 13760 TTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGACACAGCCTCTTTTATAAT 13819 || || || | | | |||||||||||| ||| || || ||||| | || Sbjct 44880 ATTAACTGGTAAACTTTCACTTAAAAATTCTTGTTCGATTTTTACTGCCTCAACAACGAT 44939 Query 13820 AA--TTGTAATAATCTCATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 13877 | ||| | ||| |||| | ||| || | ||||| || ||| ||| Sbjct 44940 ATCCTTGATCTTATCGCATTTATTG----ATAAGATAACTATTTAACAA----ACAAGCA 44991 Query 13878 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13937 || || ||||| || || ||||||| ||||||||||| |||||||| | || || ||| Sbjct 44992 AACTCGCAATGCAGACCTTCATCTCGGCTAATAAGTTCATTTGAAAACGACAAACCAGGC 45051 Query 13938 ATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAATATTCCC 13997 || | |||| ||| |||||||| || || | |||||||| || |||||| ||||| Sbjct 45052 ATGAGACCTCTTTTCTTTAACCAGAAGATCGAAGCAAATGCTCCACTAAAGAAAATTCCT 45111 Query 13998 TCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGATATCCAT 14057 ||||| |||||| || || | || |||| | | |||||| | |||||| Sbjct 45112 TCAACACAAGCAAATGCGATAACTCTGGTAGCAAAAGTAGATTTTTTATCTTTAATCCAT 45171 Query 14058 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTAAATAAA 14117 || |||||| |||| || ||||||||| | ||||| | |||||||||| | | Sbjct 45172 TTCAAAGCCCAATCAGCCTTCTTTTTAATAGATGGTATTGTGTTTATAGCATTAAGAAGA 45231 Query 14118 TATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 14177 | | || || | | | ||| || ||||| |||||||| |||||||||||| Sbjct 45232 TGATTTTTTTCGTCCGGATCACTAATATACGTATCTATAAGTAAAGAATACATTTCAGAA 45291 Query 14178 TGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCATTGT-AC 14236 || || ||||| ||| ||| ||| || |||||||| ||| | || | | | || || || Sbjct 45292 TGGATATTTTCGATAACTACCTGGAATCCATAAAAACATTTTGCCT-CTAAAATGGTGAC 45350 Query 14237 TTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCAAAAAA 14296 |||| | |||| ||||| | | ||| ||| || ||||||||| ||| || ||||| Sbjct 45351 TTCCTCGGAAAACCTTTCAACAAGATTCATATTTACAATACCATCAGAAGCAGCGAAAAA 45410 Query 14297 TGCCAATATGTTTTTAATAAAGTATTGCTCTTCAT-TGTTG--AGTTTTTTCCAATCGGA 14353 ||| | || | | || ||||||| || ||||| || || | |||||||| | Sbjct 45411 TGCAAGAATATGTGAAACAAAGTAT--CT-TTCATCTGGTGTTAAAGAATTCCAATCATA 45467 Query 14354 TAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14413 |||||| |||||||| ||||| ||| | ||||||||| | | |||| ||| || Sbjct 45468 TAAATCGGCTGAAAGATCAACTTCTTCAGCGGTCCAAAAAGAACATTCGGCTTGTTTGTA 45527 Query 14414 CATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTCGAAGATGTTTCTTT 14473 ||| ||| || || | |||| ||||| |||| || ||||| ||||||||| Sbjct 45528 CATCTTCCAGATATCGTGATATTTAATAGGGAAAAGCACTAATCT------TGTTTCTTT 45581 Query 14474 AAGA 14477 | || Sbjct 45582 AGGA 45585 >seq4120 Length=16292344 Score = 152 bits (168), Expect = 5e-32 Identities = 187/252 (74%), Gaps = 5/252 (2%) Strand=Plus/Plus Query 14112 AATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14171 |||||| || |||| ||||||| | |||||| |||||||| || ||| ||||| Sbjct 7436382 AATAAACATACCTT-TCTTTAGGATCCCTAATGTAAGTATCAATCAGCAAGGAGTACATC 7436440 Query 14172 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCA- 14230 |||||||||| || |||||||| || || || ||||||||| | || ||||| |||| Sbjct 7436441 TCAGAGTGTACATTCTCCATAGCAATTTGGAATCCATAAAAGAACCTTGCTTC--ACCAA 7436498 Query 14231 -TTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTG 14289 ||| ||||| |||||| || | | ||| |||||||||||||||||| ||| | Sbjct 7436499 TTTGAACTTCTTGTGAAAATCGCTCTACTAGATTCTCATTAACTATACCATCAGAAGCAG 7436558 Query 14290 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT 14349 ||||||||||||| | | ||||||||||| ||| || || | ||| ||||| Sbjct 7436559 CAAAAAATGCCAAAACATGTTTAATAAAGTGCCTCTCACAATCCTTTAAACTTTCCCAAT 7436618 Query 14350 CGGATAAATCCT 14361 | |||||||||| Sbjct 7436619 CTGATAAATCCT 7436630 >seq3143 Length=6417446 Score = 102 bits (112), Expect = 8e-17 Identities = 302/464 (65%), Gaps = 4/464 (1%) Strand=Plus/Minus Query 120512 ACTCCTGTAAAACCTATGCTAGCAAACGTGTGTAAATCTAGTTATTATGCATTTAAA-AA 120570 ||||| ||| ||||||| |||| | | ||||| ||| || ||| | | || || Sbjct 4746387 ACTCCAGTATTACCTATGTTAGCTGAAGCATGTAAGTCT-GTAGAGATGGCTATGAAGAA 4746329 Query 120571 GTATAAAGATGGAATCTGTGCAGAAATAAAGTACGATGGTGAACGAATTCAAATTCATAA 120630 | | | ||||||| | | |||||||| || ||||| || || | ||| ||||||| Sbjct 4746328 ATGTCCAAATGGAATGTTCTCGGAAATAAAATATGATGGAGAGAGAGTGCAAGTTCATAA 4746269 Query 120631 AGACAA-TAATTTATATAAATATTTTAGTAGAAATCTAAAACCAGTTTTATTTCATAAAA 120689 || | | | || ||||||||| | || | ||||||| ||| | ||||||| Sbjct 4746268 -GAGAGGTTCTGAATTCAAATATTTTTCTCGAGCTTTAAAACCCGTTATGGCTCATAAAG 4746210 Query 120690 TAGAGGGATTTGATGAGTTTCTAACCAGCGCTTTCCCTTCAGCTAATAACTTTATTTTAG 120749 | | || | || | |||| | | || || ||| | | |||| | ||| Sbjct 4746209 TCAATCATTTCAAGGAATATCTACCTAAAGCGTTTCCTGAGGGAGTTGACTTAGTACTAG 4746150 Query 120750 ATGCTGAATTAATATTAATTGATTTGAATACTAACAGATTTGTACCTTTTGGTTCATTAG 120809 |||| || | | || ||||| |||| ||| || | | |||| |||||| |||| | Sbjct 4746149 ATGCAGAGGTTTTGTTGGTTGATGTGAACACTGGCAAACCTTTACCATTTGGTACATTGG 4746090 Query 120810 GTATAAATANNNNNNNNNNNTTTAAAAACTCTAGCACTTGTTTATTTGTCTTTGATTGTC 120869 ||||| ||| |||||| | || |||| | | ||| |||||||||| Sbjct 4746089 GTATACATAAACAGTCCGCATTTAAAGATGCTGAAGTTTGTCTTTATGTGTTTGATTGTC 4746030 Query 120870 TATTTTACAATAATGTAAGTTTAATGAGTCTGCCATTTGTTAATAGGAGAAAAATTATTG 120929 | | ||||||| | | ||||||| | |||| |||| || || ||| ||||| || Sbjct 4746029 TTTATTACAATGGGGATATTTTAATGGATTTGCCTATTGTAAAAAGAAGACAAATTCTTC 4745970 Query 120930 TTGATAATATCAATGAAATAAAAAATAAGGTTATGGTCTCAGAA 120973 ||||||| || |||| | |||||| | |||||| | || ||| Sbjct 4745969 TTGATAACATGGTTGAAGTGAAAAATCATGTTATGTTTTCCGAA 4745926 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479694586944800