Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq1390 315 7e-81 seq1673 309 3e-79 seq4120 125 7e-24 >seq1390 Length=76047 Score = 315 bits (348), Expect = 7e-81 Identities = 609/891 (68%), Gaps = 26/891 (3%) Strand=Plus/Minus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 ||||||||| | | || |||| ||||| ||||| |||||||| | ||||| ||||| Sbjct 55086 TTTTTGATACTGAGATTCTTTTTTGTCAAAGAAGTTTGTTTTACCAACAAGTGAAATATT 55027 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAA 13487 |||||| |||||||| ||||| | || | | | ||||| || || | || || Sbjct 55026 TTCCATGAAATCGAAAGGATTGGCTGTGTTGTAAATCTTATCTTCCCCAAGGTTTATCAA 54967 Query 13488 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13547 |||||| || || | ||| |||||||| | |||| | | |||||||| || || || Sbjct 54966 TAATCTGTCGGCTACAAATTCAATATAATTGCACATAAGTTTGCAATTCATTCCAATAAG 54907 Query 13548 TTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 13607 || ||||| | | | | |||||||||||| ||| || || ||||| | ||| Sbjct 54906 ATTAACAGGTAAACTTTCACTTAAAAATTCTTGTTCGATTTTTACTGCCTCAACAACAAT 54847 Query 13608 AATCTTAATAATGTC--ATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 13665 | ||| || | || ||| | ||| || | ||||| || ||| ||| Sbjct 54846 ATCCTTGATCTTATCGCATTTATTG----ATAAGATAACTATTTAACAA----ACAAGCA 54795 Query 13666 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13725 || || ||||| || || ||||||| ||||| ||||| |||||||| | || || ||| Sbjct 54794 AATTCGCAATGCAGACCTTCATCTCGGCTAATGAGTTCATTTGAAAACGACAAACCAGGC 54735 Query 13726 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCC 13785 || | |||| ||| |||||||| || || | ||| |||| ||| |||||| ||||| Sbjct 54734 ATGAGACCTCTTTTCTTTAACCAGAAGATCGAAGCAAATGCTCCACTAAAGAAAATTCCT 54675 Query 13786 TCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCAT 13845 || || |||||| || || | || |||| | | |||||||| | ||||||| Sbjct 54674 TCGACACAAGCAAATGCGATAACTCTGGTAGCAAAAGTAGATTTTTTGTCTTTTATCCAT 54615 Query 13846 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAA 13905 || ||||| |||| || ||||||||| | ||||| | || ||||| | | | Sbjct 54614 TTCAATGCCCAATCAGCCTTCTTTTTAATAGATGGTATTGTGTTTATAGCATTAAGAAGA 54555 Query 13906 TGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 13965 || | || || | | | ||| || ||||| |||||||| |||||||||||| Sbjct 54554 TGATTTTTTTCGTCCGGATCACTAATATACGTATCTATAAGTAAAGAATACATTTCAGAA 54495 Query 13966 TGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGT-AC 14024 || || ||||| ||| ||| ||| || |||||||||||| | || ||| | || || || Sbjct 54494 TGGATATTTTCGATAACTACCTGGAATCCATAAAAACATTTTGCCTCT-AAAATGGTGAC 54436 Query 14025 CTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAA 14084 ||| | |||| ||||| | | || ||| |||||||||||| ||| || ||||| Sbjct 54435 TTCCTCGGAAAACCTTTCAACAAGATTCATATTTACAATACCATCAGAAGCAGCGAAAAA 54376 Query 14085 TGCCAATATGTTTTTAATAAAGTATTGCTCTTCAT----TGTT---GAGTTTTTTCCAAT 14137 ||| | || | | || ||||||| || ||||| |||| ||| ||||||| Sbjct 54375 TGCAAGAATATGTGAAACAAAGTAT--CT-TTCATCTGGTGTTAAAGAG----TTCCAAT 54323 Query 14138 CGGCTAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTT 14197 | |||||| |||||||| ||||| ||| | ||||||||| | | |||| || Sbjct 54322 CATATAAATCGGCTGAAAGATCAACTTCTTCAGCGGTCCAAAAAGAACATTCGGCTTGTT 54263 Query 14198 TATACATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTTG 14248 | ||||| ||| || || | |||| ||||| |||| || ||||||| Sbjct 54262 TGTACATCTTCCAGATATCGTGATATTTAATAGGGAAAAGCACTAATCTTG 54212 >seq1673 Length=160240 Score = 309 bits (342), Expect = 3e-79 Identities = 606/887 (68%), Gaps = 18/887 (2%) Strand=Plus/Plus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 ||||||||| | | || |||| || || ||||| |||||||| | ||||| ||||| Sbjct 44700 TTTTTGATACTGAGATTCTTTTTTGTCGAAGAAGTTTGTTTTACCAACAAGTGAAATATT 44759 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAACCTAGTTCTAATAA 13487 ||||||||||||||| ||||| | || | | | ||||| || || | || || Sbjct 44760 TTCCATAAAATCGAAAGGATTGGCTGTGTTGTAAATCTTATCTTCTCCAAGGTTTATCAA 44819 Query 13488 TAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTAG 13547 |||||| || || | ||| |||||||| | |||| | | |||||||| || || || Sbjct 44820 TAATCTGTCGGCTACAAATTCAATATAATTGCACATAAGTTTGCAATTCATTCCAATAAG 44879 Query 13548 TTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAAT 13607 || || || | | | | |||||||||||| ||| || || ||||| | || Sbjct 44880 ATTAACTGGTAAACTTTCACTTAAAAATTCTTGTTCGATTTTTACTGCCTCAACAACGAT 44939 Query 13608 AATCTTAATAATGTC--ATTAGAAGGAGGATATTTTAGATGTTTAAAAATTAAACACGCA 13665 | ||| || | || ||| | ||| || | ||||| || ||| ||| Sbjct 44940 ATCCTTGATCTTATCGCATTTATTG----ATAAGATAACTATTTAACAA----ACAAGCA 44991 Query 13666 AAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCCTGGC 13725 || || ||||| || || ||||||| ||||||||||| |||||||| | || || ||| Sbjct 44992 AACTCGCAATGCAGACCTTCATCTCGGCTAATAAGTTCATTTGAAAACGACAAACCAGGC 45051 Query 13726 ATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATATTCCC 13785 || | |||| ||| |||||||| || || | ||| |||| ||| |||||| ||||| Sbjct 45052 ATGAGACCTCTTTTCTTTAACCAGAAGATCGAAGCAAATGCTCCACTAAAGAAAATTCCT 45111 Query 13786 TCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGATATCCAT 13845 ||||| |||||| || || | || |||| | | |||||| | | |||||| Sbjct 45112 TCAACACAAGCAAATGCGATAACTCTGGTAGCAAAAGTAGATTTTTTATCTTTAATCCAT 45171 Query 13846 TTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTGAATAAA 13905 || |||||| |||| || ||||||||| | ||||| | || ||||| | | | Sbjct 45172 TTCAAAGCCCAATCAGCCTTCTTTTTAATAGATGGTATTGTGTTTATAGCATTAAGAAGA 45231 Query 13906 TGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATTTCAGAG 13965 || | || || | | | ||| || ||||| |||||||| |||||||||||| Sbjct 45232 TGATTTTTTTCGTCCGGATCACTAATATACGTATCTATAAGTAAAGAATACATTTCAGAA 45291 Query 13966 TGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCATTGT-AC 14024 || || ||||| ||| ||| ||| || |||||||||||| | || ||| | || || || Sbjct 45292 TGGATATTTTCGATAACTACCTGGAATCCATAAAAACATTTTGCCTCT-AAAATGGTGAC 45350 Query 14025 CTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCAAAAAA 14084 ||| | |||| ||||| | | || ||| |||||||||||| ||| || ||||| Sbjct 45351 TTCCTCGGAAAACCTTTCAACAAGATTCATATTTACAATACCATCAGAAGCAGCGAAAAA 45410 Query 14085 TGCCAATATGTTTTTAATAAAGTATTGCTCTTCAT-TGTTG--AGTTTTTTCCAATCGGC 14141 ||| | || | | || ||||||| || ||||| || || | |||||||| Sbjct 45411 TGCAAGAATATGTGAAACAAAGTAT--CT-TTCATCTGGTGTTAAAGAATTCCAATCATA 45467 Query 14142 TAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAGCTTTTTTATA 14201 |||||| |||||||| ||||| ||| | ||||||||| | | |||| ||| || Sbjct 45468 TAAATCGGCTGAAAGATCAACTTCTTCAGCGGTCCAAAAAGAACATTCGGCTTGTTTGTA 45527 Query 14202 CATTACCCATATTTCTTTATATAATATAGGAAAAACTACAAATCTTG 14248 ||| ||| || || | |||| ||||| |||| || ||||||| Sbjct 45528 CATCTTCCAGATATCGTGATATTTAATAGGGAAAAGCACTAATCTTG 45574 >seq4120 Length=16292344 Score = 125 bits (138), Expect = 7e-24 Identities = 182/252 (72%), Gaps = 5/252 (2%) Strand=Plus/Plus Query 13900 AATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 13959 |||||| | |||| ||||||| | |||||| |||||||| || ||| ||||| Sbjct 7436382 AATAAACATACCTT-TCTTTAGGATCCCTAATGTAAGTATCAATCAGCAAGGAGTACATC 7436440 Query 13960 TCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT 14019 |||||||||| || || ||||| || || || |||||||| | || ||||| |||| Sbjct 7436441 TCAGAGTGTACATTCTCCATAGCAATTTGGAATCCATAAAAGAACCTTGCTTC--ACCAA 7436498 Query 14020 TGT-ACCTCCGAGT-AAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTG 14077 | | | || | || |||||| ||| | | || |||||||| ||||||||| ||| | Sbjct 7436499 TTTGAACTTCTTGTGAAAATCGCTCTACTAGATTCTCATTAACTATACCATCAGAAGCAG 7436558 Query 14078 CAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCATTGTTGAGTTTTTTCCAAT 14137 ||||||||||||| | | ||||||||||| ||| || || | ||| ||||| Sbjct 7436559 CAAAAAATGCCAAAACATGTTTAATAAAGTGCCTCTCACAATCCTTTAAACTTTCCCAAT 7436618 Query 14138 CGGCTAAATCCT 14149 | | |||||||| Sbjct 7436619 CTGATAAATCCT 7436630 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478555466290080