Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papilio_20xuthus_20[refseq_20GCF_5F000836235.1_202015-02-02] 5,572 sequences; 243,890,167 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq3951 156 6e-33 seq1114 140 5e-28 >seq3951 Length=6844153 Score = 156 bits (172), Expect = 6e-33 Identities = 158/206 (77%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 70193 AATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATG 70252 |||||| | || |||||||| ||||||| |||||||||| ||||| | |||||| Sbjct 4102228 AATCCAGCCGACAGGAGGATGATAATGTGTGCATGGAATCCGTCAGATCTCAGTCAAATG 4102169 Query 70253 GCACTACCACCGTGTCACTGTTTGGCTCAGTTTTACTCGTACGATGGCAAATTGTCATGC 70312 || ||||| || ||||| ||| | | |||||| | | |||| |||||| ||| Sbjct 4102168 GCTCTACCTCCTTGTCATTGTCTTGTTCAGTTCCATGTGGCTAATGGAAAATTGAATTGC 4102109 Query 70313 TTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTAT 70372 ||||||||||| |||||||| || ||||| || || || || ||||||||||| |||||| Sbjct 4102108 TTAATGTATCAAAGGAGTGCAGATATGGGGCTGGGCGTGCCATTTAACATTGCCAGCTAT 4102049 Query 70373 TCTATGTTGACGCACATGATTGCTCA 70398 || | ||||| ||||||||||| || Sbjct 4102048 TCGCTTTTGACACACATGATTGCACA 4102023 Score = 123 bits (136), Expect = 4e-23 Identities = 149/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 70421 GAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATTAAAG 70480 ||||| |||||||| | || || |||| || ||||||||||| || || |||||| || Sbjct 4101534 GAGTTTGTACACACGACAGGTGATACTCATGTATATTTAAATCATATTGAACCATTACAG 4101475 Query 70481 GTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGGAGTTTGCTCGTAAAGTTGAA 70540 |||| | || | | || | ||| ||||| | ||||| |||||||| ||||||||| Sbjct 4101474 AAGCAATTAGAGAGAAAACCAAAACCATTTCCAACACTGGAATTTGCTCGGAAAGTTGAA 4101415 Query 70541 AATATTGACAGTTTTAAGTACGAAGATTTTATAATAAAAGGTTACGATCCATACCCTAAG 70600 | |||||| ||| || || ||||| ||||| |||||| ||| |||| | ||||| Sbjct 4101414 ACAATTGACGATTTCAAATATGAAGACTTTATCATAAAAAATTATAATCCCCATCCTAAA 4101355 Query 70601 ATTCCCATGGTTCTGGCTGTTTA 70623 ||| |||| ||||||| || Sbjct 4101354 ATTGAAATGGAAATGGCTGTATA 4101332 >seq1114 Length=8361563 Score = 140 bits (154), Expect = 5e-28 Identities = 350/529 (66%), Gaps = 6/529 (1%) Strand=Plus/Minus Query 96820 CCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAAT---GTCACGATACGTTACAC 96876 ||| |||||| ||||||||| | ||| |||||||| ||| | || | || ||| | Sbjct 3015098 CCAATGGCCTTGTGCCAATGTTGAGAGTGTACAAT--AATACAGCCAGG-TATGTTGACC 3015042 Query 96877 AGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACGCGGACG 96936 | || ||||| ||||| ||||| || | || | ||| | |||||||||||| | || | Sbjct 3015041 AAGGAGGCAACAAACGACCAGGAGCATTCGCTATTTACCTTGAACCTTGGCACTCTGATG 3014982 Query 96937 TTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCAGGGACT 96996 ||||||| ||| | || || || || ||||| ||||||| |||| || || | Sbjct 3014981 TTTTTGAGTTTTTAGATCTGAAAAAGAATACTGGCAAAGAAGAGGTCAGAGCAAGAGAAT 3014922 Query 96997 TGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTGGCTACT 97056 | |||||||| | ||| | |||||||| || |||||||| || | | | || | Sbjct 3014921 TATTTTATGCCTTATGGATCCCAGATTTATTTATGAAGCGGGTTGAAAAAGATGAAATGT 3014862 Query 97057 GGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAAGAGTTTG 97116 |||| |||||||| || | | || ||||| | ||||| ||||| ||||| |||| Sbjct 3014861 GGAGTCTAATGTGTCCTCATGATTGCCCGGGTCTTGCTGATTGTTGGGGAGAAGAATTTG 3014802 Query 97117 AGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGATGCACGAG 97176 | || ||| || || || || ||| || | | |||| || | || Sbjct 3014801 AAGCATTGTATGAAAAATATGAACAGGAAAAAAGATTTGTTAAGCAAGTCCGAGCTCAAG 3014742 Query 97177 AACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATTCTCTACA 97236 || | ||||| || || | || || || || || || || || ||||| || |||| Sbjct 3014741 AATTATGGAAAGCAATAATAGAAGCACAAGTGGAAACAGGCACACCATACATGCTGTACA 3014682 Query 97237 AGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGGCTCCAATC 97296 | ||| | || | || || || ||| | | ||||| || || || ||| Sbjct 3014681 AAGATTCATGTAACAGAAAAAGTAATCAAAAAAATCTTGGCACAATTAAATGCAGTAATT 3014622 Query 97297 TGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTG 97345 ||||||| |||||||| |||||| | || | || || |||||||| Sbjct 3014621 TGTGCACAGAAATTGTTGAGTACACTTCAGCAGATGAAGTTGCAGTTTG 3014573 Score = 123 bits (136), Expect = 4e-23 Identities = 309/464 (67%), Gaps = 4/464 (1%) Strand=Plus/Minus Query 97800 GCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCTGAATCTTTTGAACCG 97859 || || ||||| || || | || | ||| | || || ||| ||| || |||||||| Sbjct 3014106 GCTCCAATGCCTACAGCATCTACAGCACAAATCTTAGGAAATAATGAGTCCTTTGAACCA 3014047 Query 97860 TTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTTCAATTGACCAACGTG 97919 ||||| |||||||| ||||| ||||| ||||||||| || || | ||| Sbjct 3014046 TTCACATCAAACATTTACCAAAGACGTGTTTTGTCTGGAGAATTCCAGGTTGTTAACCAT 3013987 Query 97920 CACTTGGTTCGAGACTTGGAACGGCTCAATCTGTGGAACGATGACATGGCCCAGTTGATC 97979 || || | |||||||| || | || | ||| | || |||||| | | || Sbjct 3013986 CATTTATTGCGAGACTTAACACAGGCGGATTTATGGGATGAAGACATGAAGAATCTTATA 3013927 Query 97980 ATGTACAACAATGGGTCCATTCAAAACATT-ACCATCATCCCGGAAGAGTTGCGCAGAAT 98038 || |||| ||||| ||||||||||| ||| | | | || || | || | | ||| | Sbjct 3013926 ATTCACAATAATGGTTCCATTCAAAATATTGAGCGT-ATACCAAAGGACATAAG-AGAGT 3013869 Query 98039 C-TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAG 98097 || || || || ||||| ||| | || || || | |||||||| || |||| Sbjct 3013868 TATATAAAACAGTTTGGGAAATTTCAGTTAAAACAACAATTAAAATGGCTGCTGATAGAG 3013809 Query 98098 GTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTC 98157 ||| | || ||||| |||||||| || || | | || || || || | || | Sbjct 3013808 GTGCATTTATAGACCAAAGTCAATCTTTTAACATTCATGTGGCTGAACCGAATTATGGAA 3013749 Query 98158 GTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATC 98217 |||||||||| ||||||||||||||||| | ||| || || || || ||||||||| Sbjct 3013748 AATTGACTTCGATTCACTTTTACGCATGGAAAATGGGTCTGAAAACAGGAATGTACTATT 3013689 Query 98218 TGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGAC 98261 | | | |||| | ||| | ||||| || | || || || ||| Sbjct 3013688 TACGCATAAAGCCTGCCGCTAATGCGATTCAGTTCACAGTTGAC 3013645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741007585226720